View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6453A_low_196 (Length: 224)
Name: NF6453A_low_196
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_196 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 41 - 206
Target Start/End: Original strand, 11227380 - 11227545
Alignment:
| Q |
41 |
atcataataactgtagtgatgaagatgctaattttatgttagagtaatttaattatatgaacattttgtgcttttctaataagctataagtcatagttta |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11227380 |
atcataataactgtagtgatgaagatgctaatttcatgttagagtagtttaattatatgaacattttgtgcttttctaataagctataagtcatagttta |
11227479 |
T |
|
| Q |
141 |
ttgttcttttcaactcaattaaggtttatgaactttgtactatttttcttatatgttgacctgttt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11227480 |
ttgttcttttcaactcaattaaggtttatgaactttgtactatttttcttatatattgacctgttt |
11227545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 10128093 - 10128201
Alignment:
| Q |
88 |
tttaattatatgaacattttgtgcttttctaataagctataagtcatagtt--tattgttcttttcaactcaattaaggtttatgaactttgtactattt |
185 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||||||| || ||||| | | |||| || |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10128093 |
tttaattatatgaacattatgtgtttttcatataagctatcagacatagctctttttgtactcttcaactcaattaatgtttatgaactttgtactattt |
10128192 |
T |
|
| Q |
186 |
ttcttatat |
194 |
Q |
| |
|
||||||||| |
|
|
| T |
10128193 |
ttcttatat |
10128201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University