View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_2 (Length: 638)
Name: NF6453A_low_2
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 272 - 584
Target Start/End: Original strand, 34365666 - 34365978
Alignment:
| Q |
272 |
cataatatatagtaccgtctcaccactttcttgcattttgccgactattccccactatatatacaagttctaagttcttaggtctcataaaccaaacttt |
371 |
Q |
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| T |
34365666 |
cataatatatagtaccgtctcaccactttcttgcattttgccaactattccccactatatatacaagttctaagttcttaggtctcataaaccaaacttt |
34365765 |
T |
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| Q |
372 |
atattccttaataaatacccttaattgtttgaagatggtgtatacatcatctatgaagtcattgaaaatggtactggttaaattgatgacattttttatg |
471 |
Q |
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| T |
34365766 |
atattccttaataaatacccttaattgtttgaagatgatgtatacatcatctatgaagtcattgaaaatggtaatggttaaattgatgacattttttatg |
34365865 |
T |
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| Q |
472 |
ctaatagaggtgattacatgccaattcgggttcggattcgggggagggttaaacatgaactactatttgatgagttgcccttttgttgaaccagttgtta |
571 |
Q |
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| T |
34365866 |
ctaatagaggtgattacatgccaattcgggttcggattcgggggagggttaaacatgaactactatttgatgagttgcccttttgttgaaccagttgtta |
34365965 |
T |
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| Q |
572 |
agaacatagtgaa |
584 |
Q |
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| T |
34365966 |
agaacatagtgaa |
34365978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 34365417 - 34365600
Alignment:
| Q |
23 |
ccaaggtgaaatttcttacgtgtcaactttcatgcaatcaaacatttatttaatcagttttactataattaattcaaaacacattgattattgactagct |
122 |
Q |
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| T |
34365417 |
ccaaggtgaaatttcttacgtgtcaactttcatgcaatcagacatttatttaatcagttttactataattaattcaaaccacattgattattgactagct |
34365516 |
T |
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| Q |
123 |
agtgtgattaggtaagactcgagaagaaattatatttatagtgcatggccaatagataaagtatacaccactatctcaaacttc |
206 |
Q |
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| T |
34365517 |
agtgtgattaggtaagactcgaaaagaaattatatttatagtgcatggccaatagataaagtatacaccactatctcaaacttc |
34365600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 590 - 638
Target Start/End: Complemental strand, 34366056 - 34366008
Alignment:
| Q |
590 |
agaacctgtgtgaagcagtcatggaagtgcattcttataagagcagctg |
638 |
Q |
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| T |
34366056 |
agaacctgtatgaagcagtcatggaagtgcattcttataagagcagctg |
34366008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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