View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_20 (Length: 409)
Name: NF6453A_low_20
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 45481347 - 45481657
Alignment:
| Q |
1 |
aatatgtgctggtatgagtcttggtcttaggatggttcaacttcttacagcaacgttggctcatgcatatgattgggagttggagaatggtgtaagtcca |
100 |
Q |
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| T |
45481347 |
aatatgtgctggtatgagtcttggtcttaggatggttcaacttcttacagcaacgttggctcatgcatatgattgggagttggagaatggtgtaagtcca |
45481446 |
T |
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| Q |
101 |
gaaaagcttaatatggatgaagcatatgggctcaccttacagagagcagtgcctattttagcccatcctcgtccaaggctttcactacgtttgtacttgt |
200 |
Q |
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| T |
45481447 |
gaaaagcttaatatggatgaagcatatgggctcaccttacagagagcagtgcctattttagcccatcctcgtccaaggctttcacctcatttgtacttgt |
45481546 |
T |
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| Q |
201 |
aatcatcatcttttcgagtttggcttaatgccccttgtcttcatccaatcatcattctattattaaaattgtggatactctcaactttttaataaagcaa |
300 |
Q |
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| T |
45481547 |
aatcatcatcttttcgagtttggcttaatgccccttgccttcatccaatcatcgttctattattaaaattgtggatactctcaactttttaataaagcaa |
45481646 |
T |
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| Q |
301 |
gaaaagtttac |
311 |
Q |
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| T |
45481647 |
gaaaagtttac |
45481657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 45481653 - 45481709
Alignment:
| Q |
349 |
tttacattacattcaagtttgcttgtaaactatgaatgggccatagaggacattttg |
405 |
Q |
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| T |
45481653 |
tttacattacattcaagtttgcttgtaaactattaatgggccatagaggacattttg |
45481709 |
T |
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