View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_205 (Length: 217)
Name: NF6453A_low_205
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_205 |
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| [»] scaffold0481 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 1477803 - 1477618
Alignment:
| Q |
16 |
aagcacagacataacttacataagttaacacgacttggtccctgaatttatgaaaatatacaatcatccatttcttaaggactaagttgagcgatcaagt |
115 |
Q |
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| T |
1477803 |
aagcacagacataacttacataagttaacacgacttggtccctgaatttatgaaaatatacaatcatccatttcttaaggactaagttgagcgatcaagt |
1477704 |
T |
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| Q |
116 |
tgcattaacgcacactgttaagtgcctgaaaagttttcactaagaaaagcgaaatgatgaagcaaatttttgtctgaaactgatgt |
201 |
Q |
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| T |
1477703 |
tgcattaacgcacactattaagtgcctgaaaagttttcaataagcaaagcgaaatgatgaagcaaatttttgtctgaaactgatgt |
1477618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 1476729 - 1476553
Alignment:
| Q |
25 |
cataacttacataagttaacacgacttggtccctgaatttatgaaaatatacaatcatccatttcttaaggactaagttgagcgatcaagttgcattaac |
124 |
Q |
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| T |
1476729 |
cataacttatgtaagttaacacaacttggtcccttaatttatgaaaatatactatcatccctttcttaaggactgagttgagcgatcaggttgcattaac |
1476630 |
T |
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| Q |
125 |
gcacactgttaagtgcctgaaaagttttcactaagaaaagcgaaatgatgaagcaaatttttgtctgaaactgatgt |
201 |
Q |
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| T |
1476629 |
gcacactattaggtgcctgaaacgttttcaattagcaaagcgaaatgatgaagcgaatttttgtctgaaactgatgt |
1476553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 1474600 - 1474424
Alignment:
| Q |
25 |
cataacttacataagttaacacgacttggtccctgaatttatgaaaatatacaatcatccatttcttaaggactaagttgagcgatcaagttgcattaac |
124 |
Q |
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| T |
1474600 |
cataacttatgtaagttaacacaaattgttcccttaatttatgattatatactatcatccatttcttcaggactaagctgagtgatcaaattgcattaac |
1474501 |
T |
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| Q |
125 |
gcacactgttaagtgcctgaaaagttttcactaagaaaagcgaaatgatgaagcaaatttttgtctgaaactgatgt |
201 |
Q |
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| T |
1474500 |
acacactattaagtacctgaaaagttttcaattagcaaagcgaaatgatgaagcaaatttttgtctgaaactgatgt |
1474424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 1470072 - 1469897
Alignment:
| Q |
25 |
cataacttacataagttaacacgacttggtccctgaatttatgaaaatatacaatcatccatttcttaaggactaagttgagcgatcaagttgcattaac |
124 |
Q |
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| T |
1470072 |
cataacttatgtaagttaacacaacttggtcccttaatttatgaaaatatacttccattt-tttcttgaggactaagttgggcgatcaagttgcattaac |
1469974 |
T |
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| Q |
125 |
gcacactgttaagtgcctgaaaagttttcactaagaaaagcgaaatgatgaagcaaatttttgtctgaaactgatgt |
201 |
Q |
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| T |
1469973 |
gcacactattaggtgcctgcaaagttttcaatcagcaaagcaaaatgatgaagcaaatttttgtctgaaactgatgt |
1469897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 1471659 - 1471529
Alignment:
| Q |
71 |
atatacaatcatccatttcttaaggactaagttgagcgatcaagttgcattaacgcacactgttaagtgcctgaaaagttttcactaagaaaagcgaaat |
170 |
Q |
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| T |
1471659 |
atatactatcatccatttctcgaggactaagttgagcgatcaagttgcattaacgcacactattaggtgcctgaaaagttttaaattagcaaagtgaaat |
1471560 |
T |
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| Q |
171 |
gatgaagcaaatttttgtctgaaactgatgt |
201 |
Q |
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| T |
1471559 |
gatgaagcaaatttttgtctgaaactgatgt |
1471529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 1478779 - 1478669
Alignment:
| Q |
91 |
taaggactaagttgagcgatcaagttgcattaacgcacactgttaagtgcctgaaaagttttcactaagaaaagcgaaatgatgaagcaaatttttgtct |
190 |
Q |
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| T |
1478779 |
taaggactaagttgagcgatcaagttgcattaacacacactattaggtgcgcgaaaagttttcaattagcaaagcgaaatgatgaagcgaatttttgtct |
1478680 |
T |
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| Q |
191 |
gaaactgatgt |
201 |
Q |
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| T |
1478679 |
gaaactgatgt |
1478669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0481 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0481
Description:
Target: scaffold0481; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 3945 - 3990
Alignment:
| Q |
78 |
atcatccatttcttaagg-actaagttgagcgatcaagttgcatta |
122 |
Q |
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| T |
3945 |
atcatccatttcttaagggactaagttgagcgatcaagttacatta |
3990 |
T |
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