View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_21 (Length: 408)
Name: NF6453A_low_21
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 43388595 - 43388782
Alignment:
| Q |
22 |
attgcatcacaacaagtgacctcatgtctcctatatggttagtgcatttaaaagaatcatttacaatgtgcaataattaatatacttaattaagaaagaa |
121 |
Q |
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| T |
43388595 |
attgcatcacaacaagtgacctcatgtctcctatatggttagtgcatttaaaagaatcatttacaatgtgcaataattaatatacttaattaagaaagaa |
43388694 |
T |
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| Q |
122 |
atactctttgtgttttctgaatctcccaccaccaagtagattgctgaatttcggcttgaatcgtacttgcagcaaccaaatttggattg |
210 |
Q |
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| T |
43388695 |
atacactttgtgttttctgaatct-ccaccaccaagtagattgctgaatttcggcttgaatcgtacttgcagcaaccaaatttggattg |
43388782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 43388839 - 43388908
Alignment:
| Q |
274 |
aagctgagcaaagtgaaggatacgcagctcatgaatagagtcgtttcgaattacttgtttttacaaaggg |
343 |
Q |
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| T |
43388839 |
aagctgagcaaagtgaaggatacgcagctcatgaatagagtcatttcgacttatttgtttttacaaaggg |
43388908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 365 - 403
Target Start/End: Original strand, 43388925 - 43388963
Alignment:
| Q |
365 |
ttagtatctgatttgataaatcaaatccagttcattgtt |
403 |
Q |
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| T |
43388925 |
ttagtatctgatttgataaatcaaatccagttcattgtt |
43388963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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