View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6453A_low_220 (Length: 209)

Name: NF6453A_low_220
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6453A_low_220
NF6453A_low_220
[»] chr6 (7 HSPs)
chr6 (23-192)||(32931414-32931583)
chr6 (63-109)||(32920995-32921041)
chr6 (68-114)||(26493515-26493561)
chr6 (63-109)||(32926296-32926342)
chr6 (64-116)||(2468472-2468524)
chr6 (68-116)||(4005137-4005185)
chr6 (62-90)||(10338615-10338643)
[»] chr8 (4 HSPs)
chr8 (61-116)||(10440378-10440433)
chr8 (62-114)||(5739597-5739649)
chr8 (64-116)||(9696043-9696095)
chr8 (64-116)||(29651758-29651810)
[»] chr7 (2 HSPs)
chr7 (67-116)||(34395025-34395074)
chr7 (63-110)||(47450466-47450513)
[»] chr3 (6 HSPs)
chr3 (63-120)||(33331939-33331996)
chr3 (64-114)||(14032927-14032977)
chr3 (67-121)||(19129368-19129422)
chr3 (63-108)||(20167628-20167673)
chr3 (61-90)||(31652453-31652482)
chr3 (63-115)||(17105269-17105321)
[»] chr4 (5 HSPs)
chr4 (64-116)||(22402391-22402443)
chr4 (62-108)||(21606601-21606647)
chr4 (64-116)||(7422170-7422222)
chr4 (64-116)||(27131672-27131724)
chr4 (62-114)||(43978397-43978449)
[»] chr1 (1 HSPs)
chr1 (65-108)||(50186075-50186118)
[»] chr5 (2 HSPs)
chr5 (64-126)||(27249571-27249632)
chr5 (64-108)||(28735820-28735864)
[»] chr2 (3 HSPs)
chr2 (67-120)||(5453721-5453774)
chr2 (63-116)||(8518039-8518092)
chr2 (64-108)||(31095151-31095195)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 5e-89; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 32931583 - 32931414
Alignment:
Q  23 ctttagaccatgaaacactgacaatgacacgtgaaaagcgataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcggacatt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32931583 ctttagaccatgaaacactgacaatgacacgtgaaaagcgataataatttaagaaaatagaagtgattaaatataactacatgtgtcggtgtcggacatt 32931484  T
Q  123 gacacatgtataacactggacacgccatcaatacgaggtgtcagtgctacatactttcagacgtctatgc 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32931483 gacacatgtataacactggacacgccatcaatacgaggtgtcagtgctacatactttcagacgtctatgc 32931414  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 32921041 - 32920995
Alignment:
Q  63 ataataatttaagaaaatagaagtgatttaatataactacatgtgtc 109  Q
    |||||||||||||||||| ||||||||||||| || |||||||||||    
T  32921041 ataataatttaagaaaattgaagtgatttaatgtagctacatgtgtc 32920995  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 26493561 - 26493515
Alignment:
Q  68 aatttaagaaaatagaagtgatttaatataactacatgtgtcggtgt 114  Q
    ||||| ||||||||||||||||| ||| ||||||||||| |||||||    
T  26493561 aatttgagaaaatagaagtgattgaatgtaactacatgtatcggtgt 26493515  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 32926342 - 32926296
Alignment:
Q  63 ataataatttaagaaaatagaagtgatttaatataactacatgtgtc 109  Q
    |||||||||||||||||| ||||||||||| | || |||||||||||    
T  32926342 ataataatttaagaaaattgaagtgatttagtgtagctacatgtgtc 32926296  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 2468524 - 2468472
Alignment:
Q  64 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 116  Q
    ||||||||||||||||| ||||| ||| ||| |||| |||||||| |||||||    
T  2468524 taataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtgtcg 2468472  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 4005137 - 4005185
Alignment:
Q  68 aatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 116  Q
    ||||||| ||||||||||||||| ||| ||| |||||||||| ||||||    
T  4005137 aatttaataaaatagaagtgattgaatgtaattacatgtgtcagtgtcg 4005185  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 10338615 - 10338643
Alignment:
Q  62 gataataatttaagaaaatagaagtgatt 90  Q
    |||||||||||||||||||||||||||||    
T  10338615 gataataatttaagaaaatagaagtgatt 10338643  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 10440378 - 10440433
Alignment:
Q  61 cgataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 116  Q
    ||||||||||||||||||||| |||||||| ||| | ||||||||||||| |||||    
T  10440378 cgataataatttaagaaaataaaagtgattgaatgttactacatgtgtcgttgtcg 10440433  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 5739597 - 5739649
Alignment:
Q  62 gataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgt 114  Q
    ||||||||||| ||||||| ||| ||||| ||| ||| |||||||||||||||    
T  5739597 gataataatttgagaaaatggaaatgattgaatgtaagtacatgtgtcggtgt 5739649  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 9696043 - 9696095
Alignment:
Q  64 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 116  Q
    |||||||||||| |||| ||||||||| ||||||||| || |||| |||||||    
T  9696043 taataatttaaggaaatggaagtgattgaatataacttcacgtgttggtgtcg 9696095  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 29651810 - 29651758
Alignment:
Q  64 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 116  Q
    ||||| ||||||||||||||||||||| ||  |||| |||||||| |||||||    
T  29651810 taatagtttaagaaaatagaagtgattgaacgtaacaacatgtgttggtgtcg 29651758  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 34395025 - 34395074
Alignment:
Q  67 taatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 116  Q
    |||||||||||||||||||||||| ||| |||| ||| ||||||||||||    
T  34395025 taatttaagaaaatagaagtgattgaatctaaccacacgtgtcggtgtcg 34395074  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 47450513 - 47450466
Alignment:
Q  63 ataataatttaagaaaatagaagtgatttaatataactacatgtgtcg 110  Q
    ||||||||||||||||||||||  |||||| |||||||| ||||||||    
T  47450513 ataataatttaagaaaatagaatggatttagtataactatatgtgtcg 47450466  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 33331996 - 33331939
Alignment:
Q  63 ataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcggaca 120  Q
    |||||||||| |||||||| |||||||| ||| ||| |||||||||||||||| ||||    
T  33331996 ataataatttgagaaaataaaagtgattaaatgtaattacatgtgtcggtgtcagaca 33331939  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 14032927 - 14032977
Alignment:
Q  64 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgt 114  Q
    ||||||||||||||||||||||||||| | |||||| |||| ||| |||||    
T  14032927 taataatttaagaaaatagaagtgattaagtataacaacatatgttggtgt 14032977  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 19129422 - 19129368
Alignment:
Q  67 taatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcggacat 121  Q
    |||||||||||||  | | ||||| ||||||||||||||||||||||||| ||||    
T  19129422 taatttaagaaaaatggaatgattgaatataactacatgtgtcggtgtcgtacat 19129368  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 20167628 - 20167673
Alignment:
Q  63 ataataatttaagaaaatagaagtgatttaatataactacatgtgt 108  Q
    ||||||||||||| |||||||||||||||||| |||| ||| ||||    
T  20167628 ataataatttaaggaaatagaagtgatttaatgtaaccacacgtgt 20167673  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 90
Target Start/End: Original strand, 31652453 - 31652482
Alignment:
Q  61 cgataataatttaagaaaatagaagtgatt 90  Q
    ||||||||||||||||||||||||||||||    
T  31652453 cgataataatttaagaaaatagaagtgatt 31652482  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 17105269 - 17105321
Alignment:
Q  63 ataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtc 115  Q
    ||||||||||||||||||| |||||||| ||| ||||  ||| ||||||||||    
T  17105269 ataataatttaagaaaataaaagtgattgaatgtaacctcatttgtcggtgtc 17105321  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 22402391 - 22402443
Alignment:
Q  64 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 116  Q
    |||||| || ||||||||||||||||| ||| |||| ||||||||||||||||    
T  22402391 taataaattgagaaaatagaagtgattgaatgtaaccacatgtgtcggtgtcg 22402443  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 21606647 - 21606601
Alignment:
Q  62 gataataatttaagaaaatagaagtgatttaatataactacatgtgt 108  Q
    |||||||||||||||||||| |||||||| | | |||||||||||||    
T  21606647 gataataatttaagaaaataaaagtgattaagtgtaactacatgtgt 21606601  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 7422170 - 7422222
Alignment:
Q  64 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 116  Q
    ||||||||| ||||||||||||||||| ||| ||| || |||||| |||||||    
T  7422170 taataatttgagaaaatagaagtgattgaatgtaattatatgtgttggtgtcg 7422222  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 27131724 - 27131672
Alignment:
Q  64 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 116  Q
    ||||||||||||||||| ||||| ||| ||| |||| |||||||| |||||||    
T  27131724 taataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtgtcg 27131672  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 43978449 - 43978397
Alignment:
Q  62 gataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgt 114  Q
    |||||||||||||||||| |||||||||  ||| |||||| |||||| |||||    
T  43978449 gataataatttaagaaaacagaagtgatagaatgtaactatatgtgttggtgt 43978397  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 50186118 - 50186075
Alignment:
Q  65 aataatttaagaaaatagaagtgatttaatataactacatgtgt 108  Q
    |||||||| | ||||||||||||||||||| |||||||||||||    
T  50186118 aataattttacaaaatagaagtgatttaatgtaactacatgtgt 50186075  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 27249571 - 27249632
Alignment:
Q  64 taataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcggacattgaca 126  Q
    |||||||||| |||||| ||||||||| ||| || | |||||||| |||||||||||||||||    
T  27249571 taataatttatgaaaatggaagtgattaaatgtagc-acatgtgttggtgtcggacattgaca 27249632  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 28735864 - 28735820
Alignment:
Q  64 taataatttaagaaaatagaagtgatttaatataactacatgtgt 108  Q
    ||||||||||||||||||||||||||| ||| ||| || ||||||    
T  28735864 taataatttaagaaaatagaagtgattgaatgtaattatatgtgt 28735820  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 5453721 - 5453774
Alignment:
Q  67 taatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcggaca 120  Q
    |||||||||||||| ||||||||| |||||||| ||||| ||| || |||||||    
T  5453721 taatttaagaaaatggaagtgattgaatataaccacatgagtcagtatcggaca 5453774  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 8518039 - 8518092
Alignment:
Q  63 ataataatttaagaaaatagaagtgatttaatataactacatgtgtcggtgtcg 116  Q
    |||| ||||| ||||||||||||| ||| ||| |||||| ||||||||||||||    
T  8518039 ataacaatttgagaaaatagaagtaattgaatgtaactaaatgtgtcggtgtcg 8518092  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 31095151 - 31095195
Alignment:
Q  64 taataatttaagaaaatagaagtgatttaatataactacatgtgt 108  Q
    ||||||||| ||||||| ||||| ||| |||||||||||||||||    
T  31095151 taataatttgagaaaatggaagtaattgaatataactacatgtgt 31095195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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