View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_228 (Length: 201)
Name: NF6453A_low_228
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_228 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 33120118 - 33119951
Alignment:
| Q |
19 |
aacaatgaggttagagacccactctgttgttgatgctattcctccccatattcctctataccttaaagggtatatttcagagttgataacccatggaaca |
118 |
Q |
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| T |
33120118 |
aacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtgtatttcagagttgataacccatggaacc |
33120019 |
T |
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| Q |
119 |
gttcccattcctggtgaaaagaatattatgtagactgctaaaccaactattgccaaccatcctatatt |
186 |
Q |
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| T |
33120018 |
gttcccattcctggtgaaaagaatattatgtagactgctaaaccaactatcgccaaccatcctatatt |
33119951 |
T |
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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 33116880 - 33116784
Alignment:
| Q |
45 |
ttgttgatgctattcctccccatattcctctataccttaaagggtatatttcagagttgataacccatggaacagttcccattcctggtgaaaagaa |
141 |
Q |
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| T |
33116880 |
ttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagagtttatgacccatggaacagtccccattccaggtgaaaagaa |
33116784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 26 - 152
Target Start/End: Original strand, 21491899 - 21492025
Alignment:
| Q |
26 |
aggttagagacccactctgttgttgatgctattcctccccatattcctctataccttaaagggtatatttcagagttgataacccatggaacagttccca |
125 |
Q |
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| T |
21491899 |
aggttggaaacccacactgttgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaacccatggaactgttccca |
21491998 |
T |
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| Q |
126 |
ttcctggtgaaaagaatattatgtaga |
152 |
Q |
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| T |
21491999 |
ttccaggcgagaagaatatgatgtaga |
21492025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 21558479 - 21558576
Alignment:
| Q |
46 |
tgttgatgctattcctccccatattcctctataccttaaagggtatatttcagagttgataacccatggaacagttcccattcctggtgaaaagaata |
143 |
Q |
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| T |
21558479 |
tgttgacgcgattcctccacatattcctctgtatcttaatggatatatttcagagtttacaacccatggaactgttcccattcctggtgagaagaata |
21558576 |
T |
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