View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_23 (Length: 398)
Name: NF6453A_low_23
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 8700015 - 8699769
Alignment:
| Q |
6 |
ttattctagaactattatggattaactttgtaagcggttcaggcagcacctgaaattttattgcagtttttacttgatnnnnnnnn--gttttaaataag |
103 |
Q |
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| T |
8700015 |
ttattctagaactattatggattaagtttgtaagcggttcaagcagctcttgaaattttattgcagtttttacttgataaaaaaaaaagttttaaataag |
8699916 |
T |
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| Q |
104 |
tattttctattctatcctagaatacttaatgagatggtgaggaatctcctacaagtcttgatttcaaatctagaagagttttgtgattcattgtgatgcc |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8699915 |
tattttctattctatcctagaatacttaatgagatggtgaggaatctcctagaggtcttgatttcaaatctagaagagttttgtaattcattgtgatgcc |
8699816 |
T |
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| Q |
204 |
ttacccgacttaaggaattagtctatacactttgcacaaagataccc |
250 |
Q |
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|||||||| ||||||||||||| ||||||||||||||| |||||||| |
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| T |
8699815 |
ttacccgatttaaggaattagtttatacactttgcacagagataccc |
8699769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 14382892 - 14382932
Alignment:
| Q |
101 |
aagtattttctattctatcctagaatacttaatgagatggt |
141 |
Q |
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| T |
14382892 |
aagtattttctattctatcctaaaatacttaaagagatggt |
14382932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 52773604 - 52773527
Alignment:
| Q |
6 |
ttattctagaactattatggattaactttgtaagcggttcaggcagcacctgaaattttattgcagtttttacttgat |
83 |
Q |
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||||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
52773604 |
ttattctagaactattacggactaactttgtaagcggttgaggcagctcctgaaattttattgcagtttttacttgat |
52773527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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