View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_24 (Length: 395)
Name: NF6453A_low_24
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 38 - 390
Target Start/End: Complemental strand, 39956731 - 39956376
Alignment:
| Q |
38 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgccctaaacgtaacctgtttctg |
137 |
Q |
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| T |
39956731 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgatactcacgactattgccctagccgtaacctgtttctg |
39956632 |
T |
|
| Q |
138 |
ccacgacggaacagatttcccttcaaaccccttttcaacggaaatctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagcc |
237 |
Q |
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| T |
39956631 |
ccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagcc |
39956532 |
T |
|
| Q |
238 |
atgttacgatgaag---atgagtgaagagtgtggttgtgttgagtgtttggtttttgttttgcgattgttaatgaagtcgctttcgtgactactaggttg |
334 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956531 |
atgttacgatgaagatgatgagtgaaaagtgtggttgtgttgagtgtttggtttttgttttgcgattgttaatgaagtcgctttcgtgactactaggttg |
39956432 |
T |
|
| Q |
335 |
acatgctgtgtctatttatagtaaaggggtttggagagtttagagtggtttggttt |
390 |
Q |
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| T |
39956431 |
acatgctgtgtctatttatagtaaaggggtttcgagagtttagagtggtttggttt |
39956376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 39941087 - 39940766
Alignment:
| Q |
1 |
aagaaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatga |
100 |
Q |
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| T |
39941087 |
aagaaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatga |
39940988 |
T |
|
| Q |
101 |
tactcactactattgccctaaacgtaacctgtttctgccacgacggaacagatttcccttcaaaccccttttcaacggaaatctcatcaagttgttcatc |
200 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
39940987 |
tactcacgactattgccctaacagtaacctgtttctgccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatc |
39940888 |
T |
|
| Q |
201 |
ggaggtttcgacgtcacgtcgatgaggttctgaagccatgttacgatgaagatgagtgaagagtgtggttgtgt-tgagtgtttggtttttgttttgcga |
299 |
Q |
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| T |
39940887 |
ggaggtttcgacgtcacgtcgatgaggttctggagccatgttacgatgaagatgagtgaagagtgtggttgtatcagagtgtttggttttgattttgcga |
39940788 |
T |
|
| Q |
300 |
ttgttaatgaagtcgctttcgt |
321 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
39940787 |
ttgttaatgaagtcgctttcgt |
39940766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 28750694 - 28750890
Alignment:
| Q |
4 |
aaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatac |
103 |
Q |
| |
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||||||||||| ||||| ||||||||||| || |||||||||||||| |||||||||| ||||||||| || || ||||||||||| || ||||||| || |
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| T |
28750694 |
aaccctaacaatccagcagaaacattcaacgaaggaataatcccagttgtgagattcaacttcatcacgataaacgtgaacatcaccgacaacatgagac |
28750793 |
T |
|
| Q |
104 |
tcactactattgccctaaacgtaacctgtttctgccacgacggaacagatttcccttcaaaccccttttcaacggaaatctcatcaagttgttcatc |
200 |
Q |
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| T |
28750794 |
tcgcaaatattgccctaacagtgacctgtttctgccacgtaggaacagatgttccttcaaaccctttttccacagaaatctcctcgagttgttcatc |
28750890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 175
Target Start/End: Original strand, 28741849 - 28742020
Alignment:
| Q |
4 |
aaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatac |
103 |
Q |
| |
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||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||| || || ||||||| || |
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| T |
28741849 |
aaccctaacaacccagctgaaacattcaaagaaggaataatcccagttgtgagattcagtttcatcacaatgaacgtgaacattaccgacaacatgagac |
28741948 |
T |
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| Q |
104 |
tcactactattgccctaaacgtaacctgtttctgccacgacggaacagatttcccttcaaaccccttttcaa |
175 |
Q |
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| T |
28741949 |
tcacgaataatgccctaacagtaacctgcttctgccacgtaggaacaagttttccttcaaaccctttttcaa |
28742020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 7963656 - 7963737
Alignment:
| Q |
7 |
cctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatca |
88 |
Q |
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|||||||||||||| |||||||||| || ||||||||||||| ||||||||||| ||||||| ||||| |||||||||| |
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| T |
7963656 |
cctaacaacccagcaaaaacattcaacgaatgaataatcccagttgtgagattcagattcatcatgatgaatgtgaacatca |
7963737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 7961143 - 7961212
Alignment:
| Q |
17 |
cagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacat |
86 |
Q |
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|||| |||||||| || || |||||||| ||||| |||||||| ||||||||||| ||||| |||||||| |
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| T |
7961143 |
cagcagaaacatttaatgaaggaataattccagttgtgagattgagcttcatcacgatgaatgtgaacat |
7961212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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