View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_27 (Length: 390)
Name: NF6453A_low_27
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_27 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 336929 - 337279
Alignment:
| Q |
11 |
ggaagttccaatagtcatgcatccccaacaagtgcagcgagcattccacgatctccttcttccaactctaatcaacaacttcttgctcaaaggaaattgt |
110 |
Q |
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| T |
336929 |
ggaagttccaatagtcatgcatctccaacaagtgcagcgagcattccacgatctccttcttccaactctaatcaacaacttcttgctcaaaggaaattgt |
337028 |
T |
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| Q |
111 |
ttgcagaatcccaaataggaagatccagttttcagaagcttttggagccaaaactccctcatcttcctggaattgctccttatagaattgtcctcgggaa |
210 |
Q |
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| T |
337029 |
ttgcagaatcccaaataggaagatccagttttcagaagcttttggagccaaaactccctcatcttcctggaattgctccttatagaattgtccttgggaa |
337128 |
T |
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| Q |
211 |
tgtaaaagataaggtatcccttctgaaatctgacctactctaataatatatattaactggatctgcatgtatggacactagtatttcatttctaaatttg |
310 |
Q |
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| T |
337129 |
tgtaaaagataaggtatcccttctgaattctgatctactctaataatatatgttaactggatctgcatgtatggacactagtatttcatttctacatttg |
337228 |
T |
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| Q |
311 |
cttttgatgtgctgtaatgagtgattcgtatctaaacattttcctgaacaa |
361 |
Q |
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| T |
337229 |
cttttgatgtgctgtagtgagtgattcatatctaaacattttactgaacaa |
337279 |
T |
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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 42172507 - 42172600
Alignment:
| Q |
134 |
tccagttttcagaagcttttggagccaaaactccctcatcttcctggaattgctccttatagaattgtcctcgggaatgtaaaagataaggtat |
227 |
Q |
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| T |
42172507 |
tccagttttcagaaacttttggagccacagctccctcaacttcctggaattgctccttatagagttgtcctgggaaatgtaaaggataaggtat |
42172600 |
T |
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