View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_29 (Length: 388)
Name: NF6453A_low_29
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 21 - 299
Target Start/End: Complemental strand, 33435533 - 33435255
Alignment:
| Q |
21 |
acgacctgctattgttagtagttgaaaccaattaaagtgatagaggggccaacatagtataacatatatcctcttccgggttataaaagcctcatgttag |
120 |
Q |
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| T |
33435533 |
acgacctgctattgttagtagttgaaaccaattaaagtgatagaggggccaacatagtataacatatatcctcttccgggttataaaagcctcatgttag |
33435434 |
T |
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| Q |
121 |
cttatgcatactacaccaaccaggatagatatcaaatagaaagtgtgagtgatttgatatagtaaagatgttgctagggaacaagaaagtggctttattg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33435433 |
cttatgcatactacaccaaccaggatagatatcaaatagaaagtgtgagtgatttgatatagtaaagatgttgctagggaacaagaaagtggctttattg |
33435334 |
T |
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| Q |
221 |
ttattgctttgtctacatgttttcgtggccaatgtggttgcaaggaatgtaaacaatgatgatgagaaaaaccttgtcg |
299 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33435333 |
ttattgctttgtctacatgctttcgtggtcaatgtggttgcaaggaatgtaaacaatgatgatgagaaaaaccttgtcg |
33435255 |
T |
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