View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6453A_low_39 (Length: 362)

Name: NF6453A_low_39
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6453A_low_39
NF6453A_low_39
[»] chr8 (3 HSPs)
chr8 (65-190)||(34574525-34574650)
chr8 (253-327)||(34574713-34574787)
chr8 (28-70)||(34574218-34574260)
[»] chr5 (1 HSPs)
chr5 (324-354)||(5215561-5215591)
[»] chr1 (4 HSPs)
chr1 (324-354)||(34026753-34026783)
chr1 (326-354)||(10449448-10449476)
chr1 (326-354)||(28045457-28045485)
chr1 (326-354)||(50754862-50754890)
[»] chr7 (1 HSPs)
chr7 (326-354)||(29681911-29681939)
[»] chr6 (3 HSPs)
chr6 (326-354)||(2543736-2543764)
chr6 (326-354)||(11448195-11448223)
chr6 (326-354)||(16193859-16193887)
[»] chr3 (1 HSPs)
chr3 (326-354)||(22893892-22893920)
[»] chr2 (2 HSPs)
chr2 (326-354)||(12918671-12918699)
chr2 (326-354)||(39819201-39819229)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 65 - 190
Target Start/End: Original strand, 34574525 - 34574650
Alignment:
Q  65 tgtttgtcctttaaccattttgtctaagcattctcataatcatcactgttacaacaattttgcattagcagttccatttaactttcttattttttattgc 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34574525 tgtttgtcctttaaccattttgtctaagcattctcataatcatcactgttacaacaattttgcattagcagttccatttaactttcttattttttattgc 34574624  T
Q  165 actctattattaacaatttgagaaag 190  Q
    ||| ||||||||||||||||||||||    
T  34574625 actttattattaacaatttgagaaag 34574650  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 34574713 - 34574787
Alignment:
Q  253 gtgaatgggggttttaggaaggataaatttataattaatgaagtacaaaatttatcatatacacgtaatttttac 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34574713 gtgaatgggggttttaggaaggataaatttataattaatgaagtacaaaatttatcatatacacgtaatttttac 34574787  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 34574218 - 34574260
Alignment:
Q  28 ggtggcagaatacacataacacaaacagacagtaatatgtttg 70  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  34574218 ggtggcagaatacacataacacaaacagacagtaacatgtttg 34574260  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 354
Target Start/End: Complemental strand, 5215591 - 5215561
Alignment:
Q  324 ttaccaaccacaatgtcacccaagtattatc 354  Q
    |||||||||||||||||||||||||||||||    
T  5215591 ttaccaaccacaatgtcacccaagtattatc 5215561  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 354
Target Start/End: Complemental strand, 34026783 - 34026753
Alignment:
Q  324 ttaccaaccacaatgtcacccaagtattatc 354  Q
    |||||||||||||||||||||||||||||||    
T  34026783 ttaccaaccacaatgtcacccaagtattatc 34026753  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 354
Target Start/End: Complemental strand, 10449476 - 10449448
Alignment:
Q  326 accaaccacaatgtcacccaagtattatc 354  Q
    |||||||||||||||||||||||||||||    
T  10449476 accaaccacaatgtcacccaagtattatc 10449448  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 28045457 - 28045485
Alignment:
Q  326 accaaccacaatgtcacccaagtattatc 354  Q
    |||||||||||||||||||||||||||||    
T  28045457 accaaccacaatgtcacccaagtattatc 28045485  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 50754862 - 50754890
Alignment:
Q  326 accaaccacaatgtcacccaagtattatc 354  Q
    |||||||||||||||||||||||||||||    
T  50754862 accaaccacaatgtcacccaagtattatc 50754890  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 29681911 - 29681939
Alignment:
Q  326 accaaccacaatgtcacccaagtattatc 354  Q
    |||||||||||||||||||||||||||||    
T  29681911 accaaccacaatgtcacccaagtattatc 29681939  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 354
Target Start/End: Complemental strand, 2543764 - 2543736
Alignment:
Q  326 accaaccacaatgtcacccaagtattatc 354  Q
    |||||||||||||||||||||||||||||    
T  2543764 accaaccacaatgtcacccaagtattatc 2543736  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 11448195 - 11448223
Alignment:
Q  326 accaaccacaatgtcacccaagtattatc 354  Q
    |||||||||||||||||||||||||||||    
T  11448195 accaaccacaatgtcacccaagtattatc 11448223  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 16193859 - 16193887
Alignment:
Q  326 accaaccacaatgtcacccaagtattatc 354  Q
    |||||||||||||||||||||||||||||    
T  16193859 accaaccacaatgtcacccaagtattatc 16193887  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 354
Target Start/End: Complemental strand, 22893920 - 22893892
Alignment:
Q  326 accaaccacaatgtcacccaagtattatc 354  Q
    |||||||||||||||||||||||||||||    
T  22893920 accaaccacaatgtcacccaagtattatc 22893892  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 12918671 - 12918699
Alignment:
Q  326 accaaccacaatgtcacccaagtattatc 354  Q
    |||||||||||||||||||||||||||||    
T  12918671 accaaccacaatgtcacccaagtattatc 12918699  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 39819201 - 39819229
Alignment:
Q  326 accaaccacaatgtcacccaagtattatc 354  Q
    |||||||||||||||||||||||||||||    
T  39819201 accaaccacaatgtcacccaagtattatc 39819229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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