View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6453A_low_4 (Length: 505)
Name: NF6453A_low_4
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_4 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 118 - 257
Target Start/End: Complemental strand, 4027727 - 4027587
Alignment:
| Q |
118 |
gaatttgtgttacgaattgatcctgaaactttaaaattattcaatgaaaccgtatgtaatcat-gatttttaccttttcgttctatatttgtagatattg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| | ||||||| | || | ||||||||||||||||||| |
|
|
| T |
4027727 |
gaatttgtgttacgaattgatcctgaaactttaagatttttcaatgaaacagtatgtaatcatggttttttacttcttagctctatatttgtagatattg |
4027628 |
T |
|
| Q |
217 |
tatgagatgtgatgtaagaccaaaacctttttgtgaccttc |
257 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
4027627 |
tatgagctgtgaagtaagaccaaaacctttttgtgaccttc |
4027587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 263
Target Start/End: Complemental strand, 4013366 - 4013299
Alignment:
| Q |
196 |
gttctatatttgtagatattgtatgagatgtgatgtaagaccaaaacctttttgtgaccttctgcctt |
263 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
4013366 |
gttctatatttgtagatattgtatgagctgtagagtaagaccaaaacatttttgttaccttcttcctt |
4013299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 3951222 - 3951293
Alignment:
| Q |
196 |
gttctatatttgtagatattgtatgagatgtgatgtaagaccaaaacctttttgtgaccttctgccttatat |
267 |
Q |
| |
|
|||||||||||||||||||||| ||| | | | ||||||| ||||| ||||||||||||||| || ||||| |
|
|
| T |
3951222 |
gttctatatttgtagatattgttagagctttaaagtaagacaaaaacttttttgtgaccttcttccatatat |
3951293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 368 - 505
Target Start/End: Original strand, 5251279 - 5251406
Alignment:
| Q |
368 |
ataagaatagtggttaagcactagagcgatgatgaagcgaaggaaatgaaagataagtgtataatgcaaacaattttaacaaacaggttcatccatgata |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5251279 |
ataagaatagtggttaagcactagagcgatgatgaagcgaaggaaatgaaa----------taatgcaaacaattttaacaaacaggttcatccatgata |
5251368 |
T |
|
| Q |
468 |
attttaaaacaatcgnnnnnnntatacaaaggaatgaa |
505 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |
|
|
| T |
5251369 |
attttaaaacaatcgaaaaaaatatacaaaggaatgaa |
5251406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University