View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_40 (Length: 362)
Name: NF6453A_low_40
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 357
Target Start/End: Complemental strand, 7723190 - 7722857
Alignment:
| Q |
12 |
atgaacgatgcatcattctttgtgaaaaagagtaatggaaaatgaatgatttgaagggnnnnnnnagagtagagtagagtagagaagagtgaattgttgt |
111 |
Q |
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| T |
7723190 |
atgaacgatgcatcattctttgtgaaaaagagtaatggaaaatgaatgatttgaaggg----------gttttttagagtagagaagagtgaattgttgt |
7723101 |
T |
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| Q |
112 |
cttgtagtgtttgaagataataaaatgtcgaaatactagtcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaatacaa |
211 |
Q |
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| T |
7723100 |
cttgtagtgtttgaagataataaaatgtcgaaatactagtcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaatacaa |
7723001 |
T |
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| Q |
212 |
aatatatatagtaaaggagataaaattatagagcatannnnnnnnnnnnggacccaatgcaataaatgaaatgaagggtaagtcagggagtgagtgtgta |
311 |
Q |
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| T |
7723000 |
aatatatatagtaaaggagataaaattataaagcata--agagagagagggacccaatgcaataaatgaaatgaagggtaagtcagggagtgagtgtgta |
7722903 |
T |
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| Q |
312 |
atgtaagcaagtgtttgagtttctattatatctctgcagaattact |
357 |
Q |
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| T |
7722902 |
atgtaagcaagtgtttgagtttctattatatctctgcagaattact |
7722857 |
T |
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