View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6453A_low_41 (Length: 362)
Name: NF6453A_low_41
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_41 |
 | |
|
| [»] scaffold0279 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0279 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 21240 - 21553
Alignment:
| Q |
1 |
ggcgtaaaatcttaatcaacagccgagatcccttgaatgcgttacactgtgcttttatatagattttgtctaataatttggcaatatgtttattaaagat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21240 |
ggcgtaaaatcttaatcaacagccgagatcccttgaatgcgttacactgtgcttttagatagattttgtctaataatttggcaatatgtttattaaagat |
21339 |
T |
|
| Q |
101 |
ttttgttcttatctgcatgcttttttggttagatatgggcaggtcctctttcaggttacagggtagctgttgtgttccttaatagaggcccacagaagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21340 |
ttttgttcttatctgcatgcttttttggttagatatgggcaggtcctctttcaggttacagggtagctgttgtgttccttaatagaggcccacagaagca |
21439 |
T |
|
| Q |
201 |
gattgatataacagctaattgggatgacattggcattccaccaaaaactgttgttcaagcaagagacctttgggaggtaattcattgtacttttgtttac |
300 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
21440 |
tatagatataacagctaattggaatgacattggcattccaccaaaaactgttgttcaagcaagagacctttgggaggtaattcattgtacttttgttgac |
21539 |
T |
|
| Q |
301 |
attcaatttatgtt |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21540 |
attcaatttatgtt |
21553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 27527359 - 27527672
Alignment:
| Q |
1 |
ggcgtaaaatcttaatcaacagccgagatcccttgaatgcgttacactgtgcttttatatagattttgtctaataatttggcaatatgtttattaaagat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27527359 |
ggcgtaaaatcttaatcaacagccgagatcccttgaatgcgttacactgtgcttttagatagattttgtctaataatttggcaatatgtttattaaagat |
27527458 |
T |
|
| Q |
101 |
ttttgttcttatctgcatgcttttttggttagatatgggcaggtcctctttcaggttacagggtagctgttgtgttccttaatagaggcccacagaagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27527459 |
ttttgttcttatctgcatgcttttttggttagatatgggcaggtcctctttcaggttacagggtagctgttgtgttccttaatagaggcccacagaagca |
27527558 |
T |
|
| Q |
201 |
gattgatataacagctaattgggatgacattggcattccaccaaaaactgttgttcaagcaagagacctttgggaggtaattcattgtacttttgtttac |
300 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27527559 |
tatagatataacagctaattggaatgacattggcattccaccaaaaactgttgttcaagcaagagacctttgggaggtaattcattgtacttttgttgac |
27527658 |
T |
|
| Q |
301 |
attcaatttatgtt |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
27527659 |
attcaatttatgtt |
27527672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 70 - 314
Target Start/End: Original strand, 27533152 - 27533396
Alignment:
| Q |
70 |
ctaataatttggcaatatgtttattaaagatttttgttcttatctgcatgcttttttggttagatatgggcaggtcctctttcaggttacagggtagctg |
169 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
27533152 |
ctaataatttggcactatgtttattaaagatttttgttcttatctgcatgttttgttggatagatatgggcaggtcctctttcaggatatagggtagctg |
27533251 |
T |
|
| Q |
170 |
ttgtgttccttaatagaggcccacagaagcagattgatataacagctaattgggatgacattggcattccaccaaaaactgttgttcaagcaagagacct |
269 |
Q |
| |
|
||||||| ||||||| |||| | |||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27533252 |
ttgtgttgcttaataaaggcactcagaagcatatagatataacagctaattggaatgacattggcattccaccaaaaactgttgttcaagcaagagacct |
27533351 |
T |
|
| Q |
270 |
ttgggaggtaattcattgtacttttgtttacattcaatttatgtt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27533352 |
ttgggaggtaattcattgtacttttgttgacattcaatttatgtt |
27533396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University