View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_45 (Length: 351)
Name: NF6453A_low_45
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 5 - 332
Target Start/End: Original strand, 5826964 - 5827291
Alignment:
| Q |
5 |
atataatactagatggactgaatatcaaaactttcagactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaaagaaag |
104 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5826964 |
atatattactagatggactgaatatcaaaactttcaaactaagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaag |
5827063 |
T |
|
| Q |
105 |
cattcgtgccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5827064 |
cattcgtgccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaacttcataagctct |
5827163 |
T |
|
| Q |
205 |
cttccaggtggttacaatacatcggtaggcgaaagaggcacacagttatcagggggacaaaaacaacgtatagcaattgcaagagctatattgaaaaacc |
304 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5827164 |
cttccaggtggttacaatacttcggtaggcgaaagaggcacacagttatcaggtggacaaaaacaacgtatagcaattgcaagagctatattgaaaaacc |
5827263 |
T |
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| Q |
305 |
ctagaatacttttactggatgaggcaac |
332 |
Q |
| |
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|||||||||||||||| ||||||||||| |
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| T |
5827264 |
ctagaatacttttacttgatgaggcaac |
5827291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 317
Target Start/End: Original strand, 5768512 - 5768823
Alignment:
| Q |
6 |
tataatactagatggactgaatatcaaaactttcagactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaaagaaagc |
105 |
Q |
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|||| ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5768512 |
tatattactagatggagtggatataaaaactttcagactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaacgaaagc |
5768611 |
T |
|
| Q |
106 |
attcgtgccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctc |
205 |
Q |
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| T |
5768612 |
attcgtgccaacatagcttatggcaaagaaggaggtgctatggaggatgagataattgcagcagctaaagcagccaatgcacacaatttcataagctctc |
5768711 |
T |
|
| Q |
206 |
ttccaggtggttacaatacatcggtaggcgaaagaggcacacagttatcagggggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccc |
305 |
Q |
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||||| |||||| | || || || || ||||||||||||||| ||||||| ||||| || || ||||| || ||||||||||| || |||||||||| |
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| T |
5768712 |
ttccaaatggttatgacacctctgtcggggaaagaggcacacagctatcaggaggacagaagcagcgtattgctattgcaagagccatgctgaaaaaccc |
5768811 |
T |
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| Q |
306 |
tagaatactttt |
317 |
Q |
| |
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| T |
5768812 |
caaaatactttt |
5768823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 6 - 200
Target Start/End: Complemental strand, 5829936 - 5829742
Alignment:
| Q |
6 |
tataatactagatggactgaatatcaaaactttcagactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaaagaaagc |
105 |
Q |
| |
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|||| ||||||||||| || || |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
5829936 |
tatattactagatggagtggatctcaaaactttcagattaagctggttgagacaacaaatggggttggttggtcaagagcctattcttttcaacgaaagc |
5829837 |
T |
|
| Q |
106 |
attcgtgccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataag |
200 |
Q |
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|||||||| ||||||| |||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||| ||| ||||| |
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| T |
5829836 |
attcgtgctaacataggttatggaaaagaagggggtgctacagaggatgagatcattgcagcagctaacgcagcaaatgcacacagcttcataag |
5829742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 332
Target Start/End: Original strand, 5794793 - 5794883
Alignment:
| Q |
234 |
cgaaagaggcacacagttatcagggggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaatacttttactggatgaggcaac |
332 |
Q |
| |
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||||||||||||||||||| |||| |||||||||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
5794793 |
cgaaagaggcacacagttaccaggtggacaaaaacaatgt--------tgcaagagctatattgaaagaccctagaatacttttacttgatgaggcaac |
5794883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 332
Target Start/End: Complemental strand, 29327445 - 29327124
Alignment:
| Q |
11 |
tactagatggactgaatatcaaaactttcagactaagctggttgagacaacagatgggtttggttggtcaagagcctattcttttcaaagaaagcattcg |
110 |
Q |
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||||||||||| || ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29327445 |
tactagatggagtggatatcaaaactttcagaataagctggttgagacaacaaatgggtttggttggtcaagagcctattcttttcaacgaaagcattcg |
29327346 |
T |
|
| Q |
111 |
tgccaacatagcttatggcaaagaaggaggtgctacggaggatgagataattgcagcagctaacgcagccaatgcacacaactttataagctctcttcca |
210 |
Q |
| |
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||||||||||||||||| ||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||| |
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| T |
29327345 |
cgccaacatagcttatggtaaagaagatggtgctacggaggatgagatcatagcagcagcgaacgcagccaatgcacacaacttcataagttctcttcct |
29327246 |
T |
|
| Q |
211 |
ggtggttacaatacatcggtaggcgaaagaggcacacagttatcagggggacaaaaacaacgtatagcaattgcaagagctatattgaaaaaccctagaa |
310 |
Q |
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| |||||| | || || || ||||||||||||||||| |||| || ||||| || || || || || ||||||||||| || |||||||||||| || |
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| T |
29327245 |
gatggttatgacacttctgttggcgaaagaggcacacaactatctggaggacagaagcagcgcattgcgattgcaagagccatgctgaaaaaccctaaaa |
29327146 |
T |
|
| Q |
311 |
tacttttactggatgaggcaac |
332 |
Q |
| |
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||||||| || ||||||||||| |
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| T |
29327145 |
tacttttgcttgatgaggcaac |
29327124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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