View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_47 (Length: 348)
Name: NF6453A_low_47
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 167 - 328
Target Start/End: Original strand, 3323400 - 3323561
Alignment:
| Q |
167 |
ccagaatcacattagtatgtacaagataatttctaggaccaataatatgatttgttaattttaagaaannnnnnngactcctgaaatcaaggaccaaagt |
266 |
Q |
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| T |
3323400 |
ccagaatcacattagtatgtacaagataatttctaggaccaataatatgatttgttaattttaagaaatttttttgactcctgaaatcaaggaccaaagt |
3323499 |
T |
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| Q |
267 |
tggtgaatcacacaattatgaaattctaattcatatttgtgataaaacaaatgttccatttg |
328 |
Q |
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| T |
3323500 |
tggtgaatcacacaattatgaaattctaattcatatttgtgataaaacaaatgttccatttg |
3323561 |
T |
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Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 3323244 - 3323337
Alignment:
| Q |
11 |
agaatatcaacctcaaatgatgcataggtggagaaaatgttggatatttaaaagttggaataccaaaattgtgaataatgtaaaactagggaac |
104 |
Q |
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| T |
3323244 |
agaaaatcaacctcaaatgatgcataggtggagaaaatgttggatatttaaaagttggaataccaaaattgtgaataatgtaaaactagggaac |
3323337 |
T |
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