View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6453A_low_49 (Length: 342)

Name: NF6453A_low_49
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6453A_low_49
NF6453A_low_49
[»] chr4 (2 HSPs)
chr4 (4-336)||(40821517-40821849)
chr4 (231-336)||(40826201-40826306)
[»] chr7 (7 HSPs)
chr7 (36-336)||(20292021-20292311)
chr7 (219-325)||(20301396-20301502)
chr7 (238-336)||(20064893-20064991)
chr7 (231-336)||(20229247-20229352)
chr7 (231-336)||(20261830-20261935)
chr7 (240-336)||(20170431-20170527)
chr7 (240-336)||(20172424-20172520)


Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 4 - 336
Target Start/End: Complemental strand, 40821849 - 40821517
Alignment:
Q  4 aaaagaaaagaaaagtgataacctaaataagtagtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  40821849 aaaagaaaagaaaagtgataacctaaataagtagtgaaatgactcaaacaacattaagttcttaaaatgatagagattttcagaaccatgatttacttgt 40821750  T
Q  104 gattttttagactcttgactttaaggaaatctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatggg 203  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40821749 gattttttagactcttgactttaaggaaatctcaaatcattattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatggg 40821650  T
Q  204 tgtttcattcgttgctcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaat 303  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |    
T  40821649 tgtttcagtcgttgttcaaatatgctctctgttctgttcattttgttttgcactttgttacaagttagtattgccataaccaacatcacatcatcccagt 40821550  T
Q  304 acataaaggacaccgaaactcttatctccaaag 336  Q
    ||||||||||||| |||||||||||||||||||    
T  40821549 acataaaggacactgaaactcttatctccaaag 40821517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 336
Target Start/End: Complemental strand, 40826306 - 40826201
Alignment:
Q  231 tctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct 330  Q
    |||||| |||| ||| ||| ||||||||   ||||| |||||||||| |||  || |||||||||||| |||| ||| |||||| | ||||||||  |||    
T  40826306 tctgttttgtttattctgtgttgctattccctacaatttagtattgcaatagacaccatcacatcatctcaattcatcaaggaccctgaaactctactct 40826207  T
Q  331 ccaaag 336  Q
    ||||||    
T  40826206 ccaaag 40826201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 36 - 336
Target Start/End: Original strand, 20292021 - 20292311
Alignment:
Q  36 agtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtgattttttagactcttgactttaag---gaaa 132  Q
    ||||||||| |||||| ||| |||| ||||| |||| |||    |||| |||||  |||||||| |||||||||||||||||||||| |||||   ||||    
T  20292021 agtgaaatgtctcaaagaacattaattttttgaaataata----tttttagaactttgatttacctgtgattttttagactcttgacgttaagaaggaaa 20292116  T
Q  133 tctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcattcgttgctcaaatatgctctc 232  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||  |||| |      ||||||||||||||    
T  20292117 tctcaaatcattattaataagaaagagtggtt-tttttgtatcatagtctacttgttgatcatataatgggt--ttcagt------tcaaatatgctctc 20292207  T
Q  233 tgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctcc 332  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||| |||||| | |||||||||||||||    
T  20292208 tgttctgttcattttgttttgctatttgttacaagttaatattgccataaacaccatcacatcatcccaattcatcaaggacgctgaaactcttatctcc 20292307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 325
Target Start/End: Original strand, 20301396 - 20301502
Alignment:
Q  219 tcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccg 318  Q
    |||||| || ||| |||| |||||||| |||||| |||||||||||  |||||||| |  |||  || ||||||||||||||||| ||| |||||| | |    
T  20301396 tcaaatctgttctttgttttgttcattctgttttcctatttgttacgtgttagtatcggtatagacaccatcacatcatcccaattcatcaaggaccctg 20301495  T
Q  319 aaactct 325  Q
    |||||||    
T  20301496 aaactct 20301502  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 336
Target Start/End: Complemental strand, 20064991 - 20064893
Alignment:
Q  238 tgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag 336  Q
    |||||||| ||||||  ||||||||||| |||||||| |  |||  || ||||||||||||||||| ||| |||||| | ||||| ||  |||||||||    
T  20064991 tgttcattgtgtttttgtatttgttacatgttagtatcggtatagacaccatcacatcatcccaattcatcaaggaccctgaaacactactctccaaag 20064893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 336
Target Start/End: Original strand, 20229247 - 20229352
Alignment:
Q  231 tctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct 330  Q
    |||||| | |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||    
T  20229247 tctgttttattcattttgtgttgctatttggtacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatct 20229346  T
Q  331 ccaaag 336  Q
    ||||||    
T  20229347 ccaaag 20229352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 336
Target Start/End: Original strand, 20261830 - 20261935
Alignment:
Q  231 tctgttctgttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatct 330  Q
    |||||| | |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||    
T  20261830 tctgttgtattcattttgtgttgctatttggtacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatct 20261929  T
Q  331 ccaaag 336  Q
    ||||||    
T  20261930 ccaaag 20261935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 336
Target Start/End: Complemental strand, 20170527 - 20170431
Alignment:
Q  240 ttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag 336  Q
    |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||||||||    
T  20170527 ttcattttgtgttgctatttgctacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatctccaaag 20170431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 336
Target Start/End: Complemental strand, 20172520 - 20172424
Alignment:
Q  240 ttcattttgttttgctatttgttacaagttagtattgccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctccaaag 336  Q
    |||||||||| |||||||||| |||| |||||| |||  |||  || |||||||||||| ||||  || || ||| | |||||||| ||||||||||    
T  20172520 ttcattttgtgttgctatttgctacatgttagtgttggtatagacaccatcacatcatctcaatttatcaaagaccctgaaactctaatctccaaag 20172424  T

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