View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_50 (Length: 339)
Name: NF6453A_low_50
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 6 - 329
Target Start/End: Original strand, 36701802 - 36702125
Alignment:
| Q |
6 |
aactatttgtcctgttaaccaaagaaacgcgacactgtttggtaagcatgtgcatgcctcaactataaagtttcattcatgcaaatatattgttcttata |
105 |
Q |
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| T |
36701802 |
aactatttgtcctgttaaccaaagaaacgcgacactgtttggtaagcatgtgcatgcctcaactataaagtttcattcatgcaaatatattgttcttata |
36701901 |
T |
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| Q |
106 |
aattgtatttatacatgaggcagtggcaaaaggaataataattatgaacgtaaagaaatatgatgtgatgatgagtagtgttccacaaactgcaagttcc |
205 |
Q |
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| T |
36701902 |
aattgtatttatacatgaggcagtggcaaaaggaataataattatgaacgtaaagaaatatgatgtgatgatgagtagtgttccacaaactgcaagttcc |
36702001 |
T |
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| Q |
206 |
cctcctactcttccacatatgtattcagaagaacttcaacttaagctttaccaagctttcatattctcaattcctatacttttttccattattctctttc |
305 |
Q |
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| T |
36702002 |
cctcctactcttccacatatgtattcagaagaacttcaacttaagctttaccaagctttcatattctcaattcctatacttttttccattattctctttc |
36702101 |
T |
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| Q |
306 |
tccttttttacttgttctatctca |
329 |
Q |
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|||||||||||||||||||||||| |
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| T |
36702102 |
tccttttttacttgttctatctca |
36702125 |
T |
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