View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6453A_low_51 (Length: 338)

Name: NF6453A_low_51
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6453A_low_51
NF6453A_low_51
[»] chr1 (6 HSPs)
chr1 (82-308)||(23915210-23915428)
chr1 (20-80)||(23915125-23915185)
chr1 (22-80)||(23922776-23922834)
chr1 (82-145)||(23922872-23922935)
chr1 (164-232)||(23922954-23923022)
chr1 (20-72)||(25803226-25803278)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 82 - 308
Target Start/End: Original strand, 23915210 - 23915428
Alignment:
Q  82 tgaggagaatgaagaagagacgttacttagggttcttaatttataggcattatgatgcagtaccnnnnnnnnaaggacttcactcagtcaaaataagtca 181  Q
    ||||||||||| |||| ||||||||    |||||||||||||||||||||||| ||||||||||        ||||||||||||||||||||||||||||    
T  23915210 tgaggagaatggagaatagacgtta----gggttcttaatttataggcattataatgcagtaccttttttttaaggacttcactcagtcaaaataagtca 23915305  T
Q  182 atgaatgtagtcagaaagaaattcattcaccattaatattcttggttttttgttagtaactcagttcataccagtaatgacgtactatgacgaggtgcga 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23915306 atgaatgtagtcagaaagaaattcattcaccattaatattcttggttttttgttagtaactcagttcataccagtaatgacgtactatgacgaggtgcga 23915405  T
Q  282 ctcatgcatgcatatcgttttcatttc 308  Q
    ||    |||||||||||||||||||||    
T  23915406 ct----catgcatatcgttttcatttc 23915428  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 23915125 - 23915185
Alignment:
Q  20 ataaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccattttctctt 80  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23915125 ataaagatcattgaaatggtgagcaaaatggataaataggttgaagatgccattttctctt 23915185  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 23922776 - 23922834
Alignment:
Q  22 aaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccattttctctt 80  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  23922776 aaagatcattgaaatggtgagcaaaatggataaataggctgaagatgccattttctctt 23922834  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 23922872 - 23922935
Alignment:
Q  82 tgaggagaatgaagaagagacgttacttagggttcttaatttataggcattatgatgcagtacc 145  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||| ||| ||||||    
T  23922872 tgaggagagtggagaagagacgttacttagggttcttaatatataggcattataatgtagtacc 23922935  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 23922954 - 23923022
Alignment:
Q  164 ctcagtcaaaataagtcaatgaatgtagtcagaaagaaattcattcaccattaatattcttggtttttt 232  Q
    |||| ||||||| ||| |||||||||||||||||| ||||  | |||||||||||||||||||||||||    
T  23922954 ctcaatcaaaatgagttaatgaatgtagtcagaaacaaataaagtcaccattaatattcttggtttttt 23923022  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 25803226 - 25803278
Alignment:
Q  20 ataaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccat 72  Q
    ||||| ||||||||||||||||||||||  |||||||| ||||||| ||||||    
T  25803226 ataaacatcattgaaatggtgagcaaaaatgataaatatgttgaaggtgccat 25803278  T

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