View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6453A_low_56 (Length: 327)

Name: NF6453A_low_56
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6453A_low_56
NF6453A_low_56
[»] chr4 (10 HSPs)
chr4 (19-173)||(37179999-37180153)
chr4 (19-173)||(37181584-37181738)
chr4 (19-173)||(37189701-37189855)
chr4 (19-170)||(37187682-37187833)
chr4 (237-327)||(37180220-37180310)
chr4 (237-327)||(37189544-37189634)
chr4 (122-170)||(38704220-38704268)
chr4 (237-309)||(37181445-37181517)
chr4 (238-325)||(37187901-37187988)
chr4 (237-309)||(38704293-38704369)
[»] chr5 (2 HSPs)
chr5 (34-152)||(27096701-27096816)
chr5 (34-152)||(27103004-27103119)


Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 37179999 - 37180153
Alignment:
Q  19 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37179999 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37180098  T
Q  119 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaa 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180099 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaa 37180153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 37181738 - 37181584
Alignment:
Q  19 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181738 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37181639  T
Q  119 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaa 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181638 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaa 37181584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 37189855 - 37189701
Alignment:
Q  19 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189855 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37189756  T
Q  119 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaa 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189755 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaa 37189701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 37187682 - 37187833
Alignment:
Q  19 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 118  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||  || ||||||||||||||||||||||||||||||||||    
T  37187682 gaagtggctgctggcaatggtggaatgttgagagatggaattgttggaaaatttgtaggaaagctaggaagtggtggcatagtgagtttaggcatagaag 37187781  T
Q  119 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 170  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37187782 ggatagtaggcaatggaggaagatttccctgaggcatatttggaattgaagg 37187833  T

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Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 237 - 327
Target Start/End: Original strand, 37180220 - 37180310
Alignment:
Q  237 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagt 327  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180220 caaaagatggcgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagt 37180310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 237 - 327
Target Start/End: Complemental strand, 37189634 - 37189544
Alignment:
Q  237 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagt 327  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37189634 caaaagatggcgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatcaaggatttgaatattgccattgatagt 37189544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 38704220 - 38704268
Alignment:
Q  122 tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38704220 tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 38704268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 37181517 - 37181445
Alignment:
Q  237 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttg 309  Q
    ||||||||| |||||||||||||||||| |||| ||||| ||||| |||||||||||||  ||||||||||||    
T  37181517 caaaagatggcgagcttctaggctcatgcttgacattgtgacaacaagaagtaaagttgcaatgaaggatttg 37181445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 325
Target Start/End: Original strand, 37187901 - 37187988
Alignment:
Q  238 aaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgata 325  Q
    |||||||| |||||||||||||||||| |||| || |||||||| |||||||||| | ||||||||||||||  |  |||||||||||    
T  37187901 aaaagatggcgagcttctaggctcatgcttgacatggtcacaacaagaagtaaagctatgatgaaggatttgcttgatgccattgata 37187988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 38704293 - 38704369
Alignment:
Q  237 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagta----aagttgtgatgaaggatttg 309  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||| |||||||    |||||||||| |||||||||    
T  38704293 caaaagatgacgagcttctaggttcatgcttgacattgtcacaacaagaagtaaattaagttgtgattaaggatttg 38704369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 27096816 - 27096701
Alignment:
Q  34 aatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatg 133  Q
    |||||||||| |||||||||||||| |||||||   || |||||||  || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27096816 aatggtggaaagttgagagatggaagtgttgga---ttggtaggaatgctaggaagtggtggcatagtgagcttaggcatagaagggatagtaggcaatg 27096720  T
Q  134 gaggaagatttccttgagg 152  Q
    |||||| ||| ||||||||    
T  27096719 gaggaacattaccttgagg 27096701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 27103119 - 27103004
Alignment:
Q  34 aatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatg 133  Q
    |||||||||| |||||||||||||| |||||||   || || ||||  || |||||||||||||||||||| |||||||  |||||||| ||||||||||    
T  27103119 aatggtggaaagttgagagatggaagtgttgga---ttggttggaatgctaggaagtggtggcatagtgagcttaggcactgaagggatggtaggcaatg 27103023  T
Q  134 gaggaagatttccttgagg 152  Q
    |||||| ||| ||||||||    
T  27103022 gaggaacattaccttgagg 27103004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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