View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_59 (Length: 323)
Name: NF6453A_low_59
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 5 - 317
Target Start/End: Original strand, 43611767 - 43612079
Alignment:
| Q |
5 |
agaatcaaagaagcgataaataacaatgacaatgaacacaatcatttgtttatgcaatttggtccagtgtgcatacatctgcgactatagagcagctgta |
104 |
Q |
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| T |
43611767 |
agaaccaaagaagcgataaataacaatgacaatgaacacaatcatttgtttatgcaatttggtccagtgtgcctacatctgcgactatagagcagctgta |
43611866 |
T |
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| Q |
105 |
gtcctgtattattacagtgttacaattacaaacaatatatataagactacagtccagattacaacaatacccctgaaccgcaccgtctcactcactcagc |
204 |
Q |
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| T |
43611867 |
gtcctgtattattgcagtgttacaattacaaaccatatatataagactacggtccagattacaacaatacccctgaatcgcaccgtctcactcactcagc |
43611966 |
T |
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| Q |
205 |
tcccctgccccttgccctattatatgcttatgagccatactgaacatatcagtactaatgttgaacaaagtgttggttgtttgaaatgaatataggaaat |
304 |
Q |
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| T |
43611967 |
tcccctgccccttgccctattatatgcttatgagccatactgaacatatcagtactaatgttgaataaagtgttggttgtttgaaatgaatataggaaat |
43612066 |
T |
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| Q |
305 |
tgatagtacttac |
317 |
Q |
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| T |
43612067 |
tgatagtacttac |
43612079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 34940234 - 34940182
Alignment:
| Q |
130 |
ttacaaacaatatatataagactacagtccagattacaacaatacccctgaac |
182 |
Q |
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| T |
34940234 |
ttacaagccatatatatagtactacggtccagattagaacaatacccctgaac |
34940182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 27407245 - 27407329
Alignment:
| Q |
32 |
gacaatgaacacaatcatttgtttatgcaatttggtccagtgtgcatacatctgcgactatagagcagctgtagtcctgtattattac |
119 |
Q |
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| T |
27407245 |
gacaataaacacaattatttgattacacaatttggccaagtgt---tacatctgcgactgtagagaagctatagtcctgtattattac |
27407329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 32349735 - 32349776
Alignment:
| Q |
139 |
atatatataagactacagtccagattacaacaatacccctga |
180 |
Q |
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| T |
32349735 |
atatatataatactacggtccagattacaacaatgcccctga |
32349776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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