View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_62 (Length: 311)
Name: NF6453A_low_62
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 22794139 - 22794435
Alignment:
| Q |
1 |
gacacctttttggaaccttctcactattgctcccatcaaggacgaaaatggcaaaatcctcaaacttatcgggtaa-atatgtacaataattaattacac |
99 |
Q |
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| T |
22794139 |
gacaccattttggaaccttctcactattgctcccatcaaggacgaaaatggcaaaatcctcaaacttatcgggtaatatatgtacaataattaatta-at |
22794237 |
T |
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| Q |
100 |
cacttgatctactactatactatactatgcctcaaa-----ataagaatgtaatgtgattatgcatggtatg----gtatgtagaatgcaagtggaagtt |
190 |
Q |
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| T |
22794238 |
tac-------accact-ta--atactatgcctcaaattaaaataagaatgtaatgtgattatgcatggtttgatatatatgtagaatgcaagtggaagtt |
22794327 |
T |
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| Q |
191 |
agcaaacatactgaggggaccaaggagaagatgttacgtcccaatggattgcccgaatccttgattcgatatgatggtatatatgtaatattatatagta |
290 |
Q |
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| T |
22794328 |
agcaagcatactgaggggaccaaggagaagatgttacgtcccaatggattgcccaaatccttgattcgatatgatgg----tatgtaatattatatagta |
22794423 |
T |
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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 40955887 - 40955975
Alignment:
| Q |
182 |
gtggaagttagcaaacatactgaggggaccaaggagaagatgttacgtcccaatggattgcccgaatccttgattcgatatgatggtat |
270 |
Q |
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| T |
40955887 |
gtggaagttaacaagcatacggaagggtccaaggagaagaatttacgtcccaatgggttgcctgaatccttgattcgatatgatggtat |
40955975 |
T |
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