View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_7 (Length: 470)
Name: NF6453A_low_7
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 7820665 - 7821110
Alignment:
| Q |
18 |
catcaaagggtaattcaatccgtctttatttttaggtttgtttttgcatttgattcttgtaaatataatcaactttggttttagttactcttaacttttt |
117 |
Q |
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| T |
7820665 |
catcaaagggtaattcaatccgtctttatttttaggtttgtttttgcatttgattcttgtaaatataatcaactttggttttagttactctaaacttttt |
7820764 |
T |
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| Q |
118 |
tatcatgtggctaatgaagaacaatctaatggatgacacacatctatgagttattactattagaaaaacaataatgg-----atgcactcattggaatac |
212 |
Q |
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| T |
7820765 |
tatcatgtggttaatgaagaaccatctaatggatgacaca--tctttgagttattactattagaaaaacaaaaacgtgcagaatgcattcattggaatgc |
7820862 |
T |
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| Q |
213 |
taggt---------atttggctttgtgttcgccacattagtttgtcaaaaatcaacaaagatcgatttatgttgatgaagtataaaataaaaaattaacc |
303 |
Q |
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| T |
7820863 |
taggtcgtgttgtcatttggctttgtgttcgccacatcagtttgtcaaaaatcaacaaagatcgatttatgttgatgaagtataaaataaaaaattatcc |
7820962 |
T |
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| Q |
304 |
tgattaaaaccaaagtttgctatatttagaaggattaaatgaataatgaagccttatttttattactctaatttataataagcgacctatataacattta |
403 |
Q |
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| T |
7820963 |
tgattaaaatcaaagtttgctatatttagaaggactgaatgaataatcaagccttatttttattactctaatttataataagcgacctatataacattta |
7821062 |
T |
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| Q |
404 |
tcc-nnnnnnnnatatgtaaaatagacagaaatttttcatgattgtcc |
450 |
Q |
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| T |
7821063 |
tcctttttttttttatgtaaaattgacagaaatttttcatgattgtcc |
7821110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 267 - 406
Target Start/End: Original strand, 7810960 - 7811097
Alignment:
| Q |
267 |
gatttatgttgatgaagtataaaataaaaaattaacctgattaaaaccaaagtttgctatatttagaaggattaaatgaataatgaagccttatttttat |
366 |
Q |
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| T |
7810960 |
gattcatgttgatgaagta-aacacaaaaaattatcccgactaaaattaaagtttgct-tatttgcaaggactaaatgaataatcaaaccttatttttat |
7811057 |
T |
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| Q |
367 |
tactctaatttataataagcgacctatataacatttatcc |
406 |
Q |
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| T |
7811058 |
tactctaatttataatatgcgacctatatgacatttatcc |
7811097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 7810689 - 7810828
Alignment:
| Q |
18 |
catcaaagggtaattcaatccgtcttta-tttttaggtttgtttttgcatttgattcttgtaaatataatcaactttggttttagttactcttaac-ttt |
115 |
Q |
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| T |
7810689 |
catcaaatggtattccaatccttctttaatttttaggtttgttcatgcatttgattcctgcaaatataatgaactttagttttagttcctcaaaactttt |
7810788 |
T |
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| Q |
116 |
tttatcatgtggctaatgaagaacaatctaatggatgaca |
155 |
Q |
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| T |
7810789 |
tttatcatgtggctgatgaagatccatctaatggatgaca |
7810828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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