View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6453A_low_75 (Length: 296)

Name: NF6453A_low_75
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6453A_low_75
NF6453A_low_75
[»] chr4 (11 HSPs)
chr4 (30-254)||(5117673-5117899)
chr4 (25-242)||(54510429-54510647)
chr4 (76-242)||(40144477-40144645)
chr4 (25-197)||(47686736-47686908)
chr4 (20-61)||(28846164-28846205)
chr4 (24-61)||(388615-388652)
chr4 (22-56)||(7809054-7809088)
chr4 (22-56)||(7821005-7821039)
chr4 (22-63)||(32683131-32683172)
chr4 (31-63)||(3434832-3434864)
chr4 (25-61)||(42315933-42315969)
[»] chr2 (13 HSPs)
chr2 (22-242)||(11535543-11535764)
chr2 (24-242)||(24192661-24192880)
chr2 (77-242)||(30046463-30046621)
chr2 (77-242)||(30137507-30137665)
chr2 (18-242)||(24935282-24935499)
chr2 (18-242)||(25683975-25684192)
chr2 (79-198)||(38534595-38534715)
chr2 (77-119)||(12135528-12135570)
chr2 (16-54)||(2289342-2289380)
chr2 (24-61)||(45547966-45548003)
chr2 (19-63)||(28845635-28845678)
chr2 (25-61)||(29941940-29941976)
chr2 (23-63)||(30239158-30239198)
[»] chr1 (12 HSPs)
chr1 (25-242)||(36402953-36403171)
chr1 (19-242)||(9832586-9832809)
chr1 (24-242)||(10897510-10897730)
chr1 (25-242)||(33242460-33242678)
chr1 (22-215)||(9174783-9174977)
chr1 (30-61)||(26881820-26881851)
chr1 (22-61)||(45319526-45319565)
chr1 (20-63)||(46329025-46329068)
chr1 (21-63)||(29395533-29395575)
chr1 (24-61)||(14389473-14389510)
chr1 (29-61)||(1923372-1923404)
chr1 (22-62)||(15835374-15835414)
[»] chr8 (13 HSPs)
chr8 (20-242)||(30381817-30382039)
chr8 (25-242)||(37566520-37566738)
chr8 (30-61)||(17791620-17791651)
chr8 (19-61)||(9458558-9458600)
chr8 (31-61)||(38805929-38805959)
chr8 (23-61)||(41385867-41385905)
chr8 (24-61)||(4656127-4656164)
chr8 (18-63)||(18957826-18957871)
chr8 (30-62)||(4302115-4302147)
chr8 (25-61)||(7149085-7149121)
chr8 (75-115)||(24295794-24295834)
chr8 (21-61)||(35143137-35143177)
chr8 (25-61)||(40264274-40264310)
[»] chr7 (15 HSPs)
chr7 (30-241)||(39300430-39300643)
chr7 (80-254)||(48545094-48545270)
chr7 (33-242)||(47032188-47032399)
chr7 (30-242)||(32631405-32631609)
chr7 (25-215)||(31495216-31495409)
chr7 (77-211)||(36354701-36354826)
chr7 (23-61)||(30111844-30111882)
chr7 (134-184)||(48633760-48633809)
chr7 (16-63)||(28343367-28343414)
chr7 (25-63)||(510705-510743)
chr7 (22-63)||(3023981-3024022)
chr7 (21-54)||(12252381-12252414)
chr7 (30-63)||(12741431-12741464)
chr7 (30-63)||(32884816-32884849)
chr7 (25-61)||(152912-152948)
[»] chr5 (9 HSPs)
chr5 (24-242)||(6827950-6828170)
chr5 (24-215)||(6901354-6901546)
chr5 (22-61)||(26629508-26629547)
chr5 (79-198)||(7858016-7858136)
chr5 (21-63)||(4239575-4239617)
chr5 (24-61)||(40411469-40411506)
chr5 (25-61)||(11632685-11632721)
chr5 (25-61)||(13949800-13949836)
chr5 (30-62)||(17519567-17519599)
[»] chr3 (25 HSPs)
chr3 (30-242)||(27593815-27594029)
chr3 (134-242)||(39337520-39337629)
chr3 (76-242)||(6783238-6783404)
chr3 (30-215)||(43151945-43152112)
chr3 (24-130)||(28845611-28845718)
chr3 (21-61)||(33417116-33417156)
chr3 (25-61)||(36054009-36054045)
chr3 (82-215)||(48377796-48377931)
chr3 (21-63)||(10728120-10728162)
chr3 (18-52)||(23698032-23698066)
chr3 (18-52)||(23716487-23716521)
chr3 (18-52)||(23734943-23734977)
chr3 (19-61)||(24149830-24149872)
chr3 (21-63)||(31645359-31645401)
chr3 (25-63)||(50902417-50902455)
chr3 (22-63)||(17947277-17947318)
chr3 (20-61)||(24573427-24573468)
chr3 (24-61)||(26292562-26292599)
chr3 (30-63)||(44904961-44904994)
chr3 (25-61)||(2124704-2124740)
chr3 (19-63)||(11432604-11432648)
chr3 (18-54)||(23754605-23754641)
chr3 (25-61)||(26004847-26004883)
chr3 (25-61)||(26556918-26556954)
chr3 (25-61)||(30589896-30589932)
[»] chr6 (6 HSPs)
chr6 (76-242)||(10643211-10643379)
chr6 (18-242)||(35165518-35165735)
chr6 (25-61)||(10008374-10008410)
chr6 (24-61)||(3109348-3109385)
chr6 (23-63)||(7498157-7498197)
chr6 (25-61)||(29864751-29864787)
[»] scaffold0153 (1 HSPs)
scaffold0153 (21-61)||(33820-33860)
[»] scaffold0940 (1 HSPs)
scaffold0940 (17-63)||(3565-3611)
[»] scaffold0492 (1 HSPs)
scaffold0492 (22-62)||(12094-12134)
[»] scaffold0237 (1 HSPs)
scaffold0237 (25-61)||(20446-20482)
[»] scaffold0016 (1 HSPs)
scaffold0016 (25-61)||(80792-80828)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 30 - 254
Target Start/End: Complemental strand, 5117899 - 5117673
Alignment:
Q  30 tgtattggattgagattttaaaagactatttt--aacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttcaagggatttta 127  Q
    ||||||||||||||||||||||||||||||||  |         ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5117899 tgtattggattgagattttaaaagactattttgaataaaaaaaagtc-ttgaagattttaaaagattgtgaaggaatgtattaacttttaagggatttta 5117801  T
Q  128 aaata-atttaagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcatagatttgaaatgactgttaaagttta 226  Q
    |||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||    
T  5117800 aaatacttttaagattttgagggattttacctcataaacttttaaagatttgaaagtattttatgagaattcatagatttgaaatgactatcaaagttta 5117701  T
Q  227 gcaataattcaaaattgcagagatacat 254  Q
    ||||||||||||||||||||||||||||    
T  5117700 gcaataattcaaaattgcagagatacat 5117673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 54510647 - 54510429
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttcaagggatt 124  Q
    |||| |||||||||||||||||||||||||||||||| ||       ||||  |||||||||||||||||||| ||||||||||||||||| |  |||||    
T  54510647 gggggtgtattggattgagattttaaaagactattttgacaaaaaaagtctg-gaagattttaaaagattgtggaggaatgtattaacttttagaggatt 54510549  T
Q  125 ttaaaataattt-aagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatgactgttaaag 222  Q
    |||||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| || |||     
T  54510548 ttaaaagacttttaagattttgagggattttagctcatagacttttaaagatttgaaagtattttatgagaattcataagatttgaaatgacagtcaaat 54510449  T
Q  223 tttagcaataattcaaaatt 242  Q
    ||||||||||||||||||||    
T  54510448 tttagcaataattcaaaatt 54510429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 76 - 242
Target Start/End: Complemental strand, 40144645 - 40144477
Alignment:
Q  76 ttgaagattttaaaagattgtgaaggaatgtattaactttcaagggattttaaaataattt-aagattttgagggattttacctcatagacttttaaaga 174  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||  | ||| ||||||||||||||||||| ||||||||||||||||||    
T  40144645 ttgaagattttaaaagattgtggaggaatgtattaactttcaaaggattttaaatgacttttaagattttgagggattttagctcatagacttttaaaga 40144546  T
Q  175 tttgaaagtattttataagaattcat-agatttgaaatgactgttaaagtttagcaataattcaaaatt 242  Q
    |||||||||||||||| ||||||||| ||||||||||| ||| | ||| |||||||| |||||||||||    
T  40144545 tttgaaagtattttatgagaattcataagatttgaaataactatcaaattttagcaaaaattcaaaatt 40144477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 47686908 - 47686736
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttcaagggatt 124  Q
    |||| |||||||||||||||||||||||||||||||| |        ||||| ||||||||| |||||||||| | |||||||||||||||||| |||||    
T  47686908 gggggtgtattggattgagattttaaaagactattttgataaaaaaagtctt-gaagattttgaaagattgtggatgaatgtattaactttcaaaggatt 47686810  T
Q  125 ttaaaataattt-aagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaatt 197  Q
    |||||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  47686809 ttaaaagacttttaagattttgagggattttagctcatagacttttaaagatttgaaagtattttatgagaatt 47686736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 28846164 - 28846205
Alignment:
Q  20 attaaggggctgtattggattgagattttaaaagactatttt 61  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  28846164 attaagggggtgtattggattgagattttaaaagactatttt 28846205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 388615 - 388652
Alignment:
Q  24 aggggctgtattggattgagattttaaaagactatttt 61  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  388615 agggggtgtattggattgagattttaaaagactatttt 388652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 7809088 - 7809054
Alignment:
Q  22 taaggggctgtattggattgagattttaaaagact 56  Q
    ||||||| |||||||||||||||||||||||||||    
T  7809088 taagggggtgtattggattgagattttaaaagact 7809054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 7821039 - 7821005
Alignment:
Q  22 taaggggctgtattggattgagattttaaaagact 56  Q
    ||||||| |||||||||||||||||||||||||||    
T  7821039 taagggggtgtattggattgagattttaaaagact 7821005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 32683131 - 32683172
Alignment:
Q  22 taaggggctgtattggattgagattttaaaagactattttaa 63  Q
    ||||||| |||||||||||  |||||||||||||||||||||    
T  32683131 taagggggtgtattggattaggattttaaaagactattttaa 32683172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 3434832 - 3434864
Alignment:
Q  31 gtattggattgagattttaaaagactattttaa 63  Q
    |||||| ||||||||||||||||||||||||||    
T  3434832 gtattgaattgagattttaaaagactattttaa 3434864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 42315969 - 42315933
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactatttt 61  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  42315969 gggggtgtattggattgagattttaaaagactgtttt 42315933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 11535764 - 11535543
Alignment:
Q  22 taaggggctgtattggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttcaaggg 121  Q
    ||||||| ||||||| |||||||||||||||||||||||| ||       ||||| |||||||||||||||||||| |||||||||||||||||||| ||    
T  11535764 taagggggtgtattgaattgagattttaaaagactattttgacaaaaaaagtctt-gaagattttaaaagattgtggaggaatgtattaactttcaaagg 11535666  T
Q  122 attttaaaataattt-aagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatgactgtta 219  Q
    ||||||||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | |    
T  11535665 attttaaaagacttttaagattttgagggattttagctcatagacttttaaagatttgaaagtattttatgagaattcataagatttgaaatgactatca 11535566  T
Q  220 aagtttagcaataattcaaaatt 242  Q
    || ||||||||||||||||||||    
T  11535565 aattttagcaataattcaaaatt 11535543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 24 - 242
Target Start/End: Original strand, 24192661 - 24192880
Alignment:
Q  24 aggggctgtattggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttcaagggat 123  Q
    ||||| |||||||||||||||||||||||||||||||| |        || ||||||||||||||||||||||| ||||||||||||||||||||  |||    
T  24192661 agggggtgtattggattgagattttaaaagactattttgataaaaaaagt-tttgaagattttaaaagattgtggaggaatgtattaactttcaaaagat 24192759  T
Q  124 tttaaaataattt-aagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatgactgttaaa 221  Q
    ||||||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | |||    
T  24192760 tttaaaagacttttaagattttgagggattttagctcatagacttttaaagatttgaaagtattttatgagaattcataagatttgaaatgactatcaaa 24192859  T
Q  222 gtttagcaataattcaaaatt 242  Q
     ||||||||||||||||||||    
T  24192860 ttttagcaataattcaaaatt 24192880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 77 - 242
Target Start/End: Complemental strand, 30046621 - 30046463
Alignment:
Q  77 tgaagattttaaaagattgtgaaggaatgtattaactttcaagggattttaaaataatttaagattttgagggattttacctcatagacttttaaagatt 176  Q
    ||||||||||||||||||||| |||||||  ||||||||||||  |||||        || ||||||||| |||||||| |||| |||||||||||||||    
T  30046621 tgaagattttaaaagattgtgtaggaatgccttaactttcaag--atttt--------ttgagattttgaaggattttaactcaaagacttttaaagatt 30046532  T
Q  177 tgaaagtattttataagaattcata-gatttgaaatga--ctgttaaagtttagcaataattcaaaatt 242  Q
    |||||||| ||||| ||||||| || ||||||||||||  || ||||| ||||| || |||||||||||    
T  30046531 tgaaagtactttatgagaattcctaggatttgaaatgactctattaaattttagaaaaaattcaaaatt 30046463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 77 - 242
Target Start/End: Complemental strand, 30137665 - 30137507
Alignment:
Q  77 tgaagattttaaaagattgtgaaggaatgtattaactttcaagggattttaaaataatttaagattttgagggattttacctcatagacttttaaagatt 176  Q
    ||||||||||||||||||||| |||||||  ||||||||||||  |||||        || ||||||||| |||||||| |||| |||||||||||||||    
T  30137665 tgaagattttaaaagattgtgtaggaatgccttaactttcaag--atttt--------ttgagattttgaaggattttaactcaaagacttttaaagatt 30137576  T
Q  177 tgaaagtattttataagaattcata-gatttgaaatga--ctgttaaagtttagcaataattcaaaatt 242  Q
    |||||||| ||||| ||||||| || ||||||||||||  || ||||| ||||| || |||||||||||    
T  30137575 tgaaagtactttatgagaattcctaggatttgaaatgactctattaaattttagaaaaaattcaaaatt 30137507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 24935282 - 24935499
Alignment:
Q  18 aaattaagg-ggctgtattggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttc 116  Q
    ||||||||| || ||||||||||||||||||||||||||||||||          ||| | |||||||||||||||||||| |||||||  |||||||||    
T  24935282 aaattaaggagggtgtattggattgagattttaaaagactattttggtaaaaaaagtcat-gaagattttaaaagattgtgtaggaatgccttaactttc 24935380  T
Q  117 aagggattttaaaataatttaagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaa-ttcatagatttgaaatga-- 213  Q
    |||  |||||        || |||||||||||||||||| |||| | ||||||||||||||||||||| ||||| |||| |||  |||||||||||||      
T  24935381 aag--atttt--------ttgagattttgagggattttaactcaaaaacttttaaagatttgaaagtactttatgagaatttctaagatttgaaatgact 24935470  T
Q  214 ctgttaaagtttagcaataattcaaaatt 242  Q
    || ||||| ||||| || |||||||||||    
T  24935471 ctattaaattttagaaaaaattcaaaatt 24935499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 25683975 - 25684192
Alignment:
Q  18 aaattaagg-ggctgtattggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttc 116  Q
    ||||||||| || ||||||||||||||||||||||||||||||||          ||| | |||||||||||||||||||| |||||||  |||||||||    
T  25683975 aaattaaggagggtgtattggattgagattttaaaagactattttggtaaaaaaagtcat-gaagattttaaaagattgtgtaggaatgccttaactttc 25684073  T
Q  117 aagggattttaaaataatttaagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatga-- 213  Q
    |||  |||||        || |||||||||||||||||| |||| | ||||||||||||||||||||| |||||  |||||| | |||||||||||||      
T  25684074 aag--atttt--------tttagattttgagggattttaactcaaaaacttttaaagatttgaaagtactttatgtgaattcctaagatttgaaatgact 25684163  T
Q  214 ctgttaaagtttagcaataattcaaaatt 242  Q
    || ||||| ||||| || |||||||||||    
T  25684164 ctattaaattttagaaaaaattcaaaatt 25684192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 38534595 - 38534715
Alignment:
Q  79 aagattttaaaagattgtgaaggaatgtattaactttcaagggattt-taaaataatt-taagattttgagggattttacctcatagacttttaaagatt 176  Q
    ||||||||||||||||| | |||||||||||||||||||||   ||| ||||| | || |||||||| |  |||||||| ||||||||||||| ||||||    
T  38534595 aagattttaaaagattgcgtaggaatgtattaactttcaagatttttgtaaaagacttctaagatttaggtggattttaactcatagactttt-aagatt 38534693  T
Q  177 tgaaagtattttataagaattc 198  Q
    | |||||| ||| | |||||||    
T  38534694 ttaaagtagtttgtgagaattc 38534715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 12135570 - 12135528
Alignment:
Q  77 tgaagattttaaaagattgtgaaggaatgtattaactttcaag 119  Q
    ||||||||||||||||||||| | |||||||||||||||||||    
T  12135570 tgaagattttaaaagattgtgtaagaatgtattaactttcaag 12135528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 2289380 - 2289342
Alignment:
Q  16 aaaaattaaggggctgtattggattgagattttaaaaga 54  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  2289380 aaaaattaagggggtgtattggattgggattttaaaaga 2289342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 45548003 - 45547966
Alignment:
Q  24 aggggctgtattggattgagattttaaaagactatttt 61  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  45548003 agggggtgtattggattgagattttaaaagactgtttt 45547966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 28845678 - 28845635
Alignment:
Q  19 aattaaggggctgtattggattgagattttaaaagactattttaa 63  Q
    |||||||||| |||||||||||  |||||||||||||||||||||    
T  28845678 aattaagggg-tgtattggattaggattttaaaagactattttaa 28845635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 29941976 - 29941940
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactatttt 61  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  29941976 gggggtgtattggattgagattttaaaagactgtttt 29941940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 30239158 - 30239198
Alignment:
Q  23 aaggggctgtattggattgagattttaaaagactattttaa 63  Q
    |||||| |||||||||||  |||||||||||||||||||||    
T  30239158 aagggggtgtattggattatgattttaaaagactattttaa 30239198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 36403171 - 36402953
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttcaagggatt 124  Q
    |||| |||||||||||||||||||||||||||||||| ||       ||||| |||||||||||||||||||| |||||||||||||||||||| |||||    
T  36403171 gggggtgtattggattgagattttaaaagactattttgacaaaaaaagtctt-gaagattttaaaagattgtggaggaatgtattaactttcaaaggatt 36403073  T
Q  125 ttaaaataattt-aagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatgactgttaaag 222  Q
    |||||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||| | |||     
T  36403072 ttaaaagacttttaagattttgagggattttagctcatagacttttaaagatttgaaagcattttatgagaattcataagatttgaaatgactatcaaat 36402973  T
Q  223 tttagcaataattcaaaatt 242  Q
    ||||||||||||||||||||    
T  36402972 tttagcaataattcaaaatt 36402953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 9832809 - 9832586
Alignment:
Q  19 aattaaggggctgtattggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttcaa 118  Q
    |||||||||| |||||| |||||||||||||||||||||||| | |       ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  9832809 aattaagggggtgtattagattgagattttaaaagactatttga-caaaaaaagtctt-gaagattttaaaagattgtggaggaatgtattaactttcaa 9832712  T
Q  119 gggattttaaaataattt-aagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatgactg 216  Q
      |||||||||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||     
T  9832711 aagattttaaaagacttttaagattttgagggattttagctcatagacttttaaagatttgaaagtattttatgagaattcataagatttgaaatgacta 9832612  T
Q  217 ttaaagtttagcaataattcaaaatt 242  Q
    | ||| ||||||||||||||||||||    
T  9832611 tcaaattttagcaataattcaaaatt 9832586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 10897730 - 10897510
Alignment:
Q  24 aggggctgtattggattgagattttaaaagactattttaacnnnnnnn-gtctttgaagattttaaaagattgtgaaggaatgtattaactttcaaggga 122  Q
    ||||| |||||||||||||||||||||||||||||||| |         ||||| |||||||||||||||||||| |||||||||||||||||||| |||    
T  10897730 agggggtgtattggattgagattttaaaagactattttgagaaaaaaaagtctt-gaagattttaaaagattgtggaggaatgtattaactttcaaagga 10897632  T
Q  123 ttttaaaataattt-aagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatgactgttaa 220  Q
    |||||||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | ||    
T  10897631 ttttaaaagacttttaagattttgagggattttagctcatagacttttaaagatttgaaagtattttatgagaattcataagatttgaaatgactatcaa 10897532  T
Q  221 agtttagcaataattcaaaatt 242  Q
    | ||||||||||||||||||||    
T  10897531 attttagcaataattcaaaatt 10897510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 33242460 - 33242678
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactattttaacnnnnnnn-gtctttgaagattttaaaagattgtgaaggaatgtattaactttcaagggat 123  Q
    |||| ||||||| |||||||||||||||||||||||| ||        ||||| |||||||||||| ||||||| | |||||||||||||||||| ||||    
T  33242460 gggggtgtattgcattgagattttaaaagactattttgacaaaaaaaagtctt-gaagattttaaa-gattgtggatgaatgtattaactttcaaaggat 33242557  T
Q  124 tttaaaataattt-aagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatgactgttaaa 221  Q
    ||||||| | ||| |||||||| |||||||||| || ||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||| | |||    
T  33242558 tttaaaagacttttaagattttaagggattttagcttatagacttttaaagatttgaaagcattttatgagaattcataagatttgaaatgactatcaaa 33242657  T
Q  222 gtttagcaataattcaaaatt 242  Q
     ||||||||||||||||||||    
T  33242658 ttttagcaataattcaaaatt 33242678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 9174977 - 9174783
Alignment:
Q  22 taaggggctgtattggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttcaaggg 121  Q
    ||||||| |||||| ||||||||||||||||||||||||||||       ||| |||||||||||||||||||||| ||||||||| |||||||||||      
T  9174977 taaggggatgtatttgattgagattttaaaagactattttaacaaaaaaagtc-ttgaagattttaaaagattgtgtaggaatgta-taactttcaagat 9174880  T
Q  122 attt-taaaata-atttaagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatgact 215  Q
     ||| ||||| |  ||||||||||  |  ||||||| |||  ||| |||| |||||||||||||||||||| ||||||| | |||||||||||||||    
T  9174879 ttttataaaagacttttaagatttcaaaagattttaactccaagattttttaagatttgaaagtattttatgagaattcgtaagatttgaaatgact 9174783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 61
Target Start/End: Original strand, 26881820 - 26881851
Alignment:
Q  30 tgtattggattgagattttaaaagactatttt 61  Q
    ||||||||||||||||||||||||||||||||    
T  26881820 tgtattggattgagattttaaaagactatttt 26881851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 45319565 - 45319526
Alignment:
Q  22 taaggggctgtattggattgagattttaaaagactatttt 61  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  45319565 taagggggtgtattggattgagattttaaaagactgtttt 45319526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 46329068 - 46329025
Alignment:
Q  20 attaaggggctgtattggattgagattttaaaagactattttaa 63  Q
    ||||||||| |||||||||||  |||||||||||||||||||||    
T  46329068 attaagggggtgtattggattaggattttaaaagactattttaa 46329025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 29395533 - 29395575
Alignment:
Q  21 ttaaggggctgtattggattgagattttaaaagactattttaa 63  Q
    |||||||| |||||||||||  |||||||||||||||||||||    
T  29395533 ttaagggggtgtattggattaggattttaaaagactattttaa 29395575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 14389510 - 14389473
Alignment:
Q  24 aggggctgtattggattgagattttaaaagactatttt 61  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  14389510 agggggtgtattggattgagattttaaaagactgtttt 14389473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 1923372 - 1923404
Alignment:
Q  29 ctgtattggattgagattttaaaagactatttt 61  Q
    |||||||||||||||||||||||||| ||||||    
T  1923372 ctgtattggattgagattttaaaagattatttt 1923404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 15835414 - 15835374
Alignment:
Q  22 taaggggctgtattggattgagattttaaaagactatttta 62  Q
    ||||||| |||||||||||  ||||||||||||||||||||    
T  15835414 taagggggtgtattggattaggattttaaaagactatttta 15835374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 8e-64; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 30381817 - 30382039
Alignment:
Q  20 attaaggggctgtattggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttcaag 119  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||       ||||| |||||||||||||||||||| ||||||||||||||||||||     
T  30381817 attaagggg-tgtattggattgagattttaaaagactattttgacaaaaaaagtctt-gaagattttaaaagattgtggaggaatgtattaactttcaaa 30381914  T
Q  120 ggattttaaaataattta-agattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatgactgt 217  Q
    ||||||||||| | |||  |||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||| |    
T  30381915 ggattttaaaagacttttgagattttgagggattttagctcatagacttttaaagatttgaaagcattttatgagaattcataagatttgaaatgactat 30382014  T
Q  218 taaagtttagcaataattcaaaatt 242  Q
     ||| ||||||||||||||||||||    
T  30382015 caaattttagcaataattcaaaatt 30382039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 37566520 - 37566738
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttcaagggatt 124  Q
    |||| |||||||||||||||||||||||||||||||| ||       ||||| |||||||||||||||||||| ||||||||||| |||||||| |||||    
T  37566520 gggggtgtattggattgagattttaaaagactattttgacaaaaaaagtctt-gaagattttaaaagattgtggaggaatgtattgactttcaaaggatt 37566618  T
Q  125 ttaaaataattt-aagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatgactgttaaag 222  Q
    |||||| | ||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| | |||     
T  37566619 ttaaaagacttttaagattttgagggattttagctcatagacttttaaatatttgaaagtattttatgagaattcataagatttgaaatgactatcaaat 37566718  T
Q  223 tttagcaataattcaaaatt 242  Q
    ||||||||||||||||||||    
T  37566719 tttagcaataattcaaaatt 37566738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 61
Target Start/End: Complemental strand, 17791651 - 17791620
Alignment:
Q  30 tgtattggattgagattttaaaagactatttt 61  Q
    ||||||||||||||||||||||||||||||||    
T  17791651 tgtattggattgagattttaaaagactatttt 17791620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 9458600 - 9458558
Alignment:
Q  19 aattaaggggctgtattggattgagattttaaaagactatttt 61  Q
    ||||| |||| ||||||||||||||||||||||||||| ||||    
T  9458600 aattaggggggtgtattggattgagattttaaaagactgtttt 9458558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 61
Target Start/End: Original strand, 38805929 - 38805959
Alignment:
Q  31 gtattggattgagattttaaaagactatttt 61  Q
    |||||||||||||||||||||||||||||||    
T  38805929 gtattggattgagattttaaaagactatttt 38805959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 41385867 - 41385905
Alignment:
Q  23 aaggggctgtattggattgagattttaaaagactatttt 61  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  41385867 aagggggtgtattggattgagattttaaaagactgtttt 41385905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 4656164 - 4656127
Alignment:
Q  24 aggggctgtattggattgagattttaaaagactatttt 61  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  4656164 agggggtgtattggattgagattttaaaagactgtttt 4656127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 18957826 - 18957871
Alignment:
Q  18 aaattaaggggctgtattggattgagattttaaaagactattttaa 63  Q
    ||||| ||||| |||||||||||  |||||||||||||||||||||    
T  18957826 aaatttagggggtgtattggattaggattttaaaagactattttaa 18957871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 4302115 - 4302147
Alignment:
Q  30 tgtattggattgagattttaaaagactatttta 62  Q
    ||||||||||||||| |||||||||||||||||    
T  4302115 tgtattggattgagaatttaaaagactatttta 4302147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 7149121 - 7149085
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactatttt 61  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  7149121 gggggtgtattggattgagattttaaaagactgtttt 7149085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 24295794 - 24295834
Alignment:
Q  75 tttgaagattttaaaagattgtgaaggaatgtattaacttt 115  Q
    |||||||||||||||| |||||| |||||| ||||||||||    
T  24295794 tttgaagattttaaaaaattgtgtaggaatatattaacttt 24295834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 35143177 - 35143137
Alignment:
Q  21 ttaaggggctgtattggattgagattttaaaagactatttt 61  Q
    |||||||| ||||||||||| ||||| ||||||||||||||    
T  35143177 ttaaggggatgtattggattaagattgtaaaagactatttt 35143137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 40264274 - 40264310
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactatttt 61  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  40264274 gggggtgtattggattgagattttaaaagactgtttt 40264310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 39300430 - 39300643
Alignment:
Q  30 tgtattggattgagattttaaaagactattttaacnnnnnnn-gtctttgaagattttaaaagattgtgaaggaatgtattaactttcaagggattttaa 128  Q
    |||||||||||||||||||||||||||||||| ||        ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  39300430 tgtattggattgagattttaaaagactattttgacaaaaaaaagtctt-gaagattttaaaagattgtggaggaatgtattaactttcaaaggattttaa 39300528  T
Q  129 aataattt-aagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatgactgttaaagttta 226  Q
    |  | ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | ||| ||||    
T  39300529 atgacttttaagattttgagggattttagctcatagacttttaaagatttgaaagtattttatgagaattcataagatttgaaatgactatcaaatttta 39300628  T
Q  227 gcaataattcaaaat 241  Q
    |||||||||||||||    
T  39300629 gcaataattcaaaat 39300643  T

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Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 80 - 254
Target Start/End: Original strand, 48545094 - 48545270
Alignment:
Q  80 agattttaaaagattgtgaaggaatgtattaactttcaagggattttaaaataattta-agattttgagggattttacctcatagacttttaaagatttg 178  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||| | |||  |||||||||||||||||| ||||||||||| ||||||||||    
T  48545094 agattttaaaaaattgtgaaggaatgtattaactttcaagagattttaaaagactttttagattttgagggattttagctcatagacttctaaagatttg 48545193  T
Q  179 aaagtattttataagaattcat-agatttgaaatgactgttaaagtttagcaataattcaaaattgc-agagatacat 254  Q
    |||||||||||| ||||||||| ||||||||||| ||| | ||| |||||||||||||||||||| | ||||||||||    
T  48545194 aaagtattttatgagaattcataagatttgaaataactatcaaa-tttagcaataattcaaaattacgagagatacat 48545270  T

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Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 33 - 242
Target Start/End: Complemental strand, 47032399 - 47032188
Alignment:
Q  33 attggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttcaagggattttaaaata 132  Q
    ||||||||||||||||||||||||||||| |        ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||| |    
T  47032399 attggattgagattttaaaagactattttgataaataaagtctt-gaagattttaaaagattgtggaggaatgtattaactttcaaggaattttaaaaga 47032301  T
Q  133 attt-aagattttgagggattttacctcatagacttttaaaga-tttgaaagtattttataagaattcat-agatttgaaatgactgttaaagtttagca 229  Q
     ||| |||||||||||||||| || |||||| ||  ||||||| |||||||||||||||| | ||||||| ||||||||||||||| | ||| ||||| |    
T  47032300 ctttaaagattttgagggattctaactcataaaccattaaagattttgaaagtattttatgataattcataagatttgaaatgactatcaaattttagta 47032201  T
Q  230 ataattcaaaatt 242  Q
    |||||||||||||    
T  47032200 ataattcaaaatt 47032188  T

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Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 242
Target Start/End: Complemental strand, 32631609 - 32631405
Alignment:
Q  30 tgtattggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttcaagggattttaaa 129  Q
    ||||||||||||||||||| ||||||||||||  |       ||| | ||||||||||||| |||||| ||||||| |||||||||||||  |||||       
T  32631609 tgtattggattgagattttgaaagactattttggcaaaaaaagtcat-gaagattttaaaaaattgtgtaggaatgcattaactttcaag--atttt--- 32631516  T
Q  130 ataatttaagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatga--ctgttaaagttta 226  Q
         || |||||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||| | |||||||||||||  || ||||| ||||    
T  32631515 -----ttgagattttgagggattttaactcaaagacttttaaagatttgaaagtactttatgagaattcctaagatttgaaatgactctattaaatttta 32631421  T
Q  227 gcaataattcaaaatt 242  Q
    | || |||||||||||    
T  32631420 gaaaaaattcaaaatt 32631405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 215
Target Start/End: Complemental strand, 31495409 - 31495216
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttcaagggatt 124  Q
    |||| ||||||||||||||||||||||| ||||||||  |          ||||||||||||||||||||||| |||||| ||| ||||||||||   ||    
T  31495409 ggggatgtattggattgagattttaaaatactattttggccaaagaaagttttgaagattttaaaagattgtgtaggaatatat-aactttcaagatttt 31495311  T
Q  125 t-taaaataa--tttaagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatgact 215  Q
    | |||||  |  |||||||||| || |||||||| |||| ||| |||| |||||||||||||||||||| ||||||| | |||||||||||||||    
T  31495310 tataaaaagacttttaagatttcgaaggattttaactcaaagattttttaagatttgaaagtattttatgagaattcgtaagatttgaaatgact 31495216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 211
Target Start/End: Original strand, 36354701 - 36354826
Alignment:
Q  77 tgaagattttaaaagattgtgaaggaatgtattaactttcaagggattttaaaataatttaagattttgagggattttacctcatagacttttaaagatt 176  Q
    ||||||||||||||||||||| | ||||| |||||||||||||  |||||        || ||||||||||| |||||| |||| |||||||||||||||    
T  36354701 tgaagattttaaaagattgtgtaagaatgcattaactttcaag--atttt--------ttgagattttgaggaattttaactcaaagacttttaaagatt 36354790  T
Q  177 tgaaagtattttataagaattcat-agatttgaaat 211  Q
    |||||||| ||||| | ||||| | |||||||||||    
T  36354791 tgaaagtactttatgaaaattcctaagatttgaaat 36354826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 30111882 - 30111844
Alignment:
Q  23 aaggggctgtattggattgagattttaaaagactatttt 61  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  30111882 aagggggtgtattggattgagattttaaaagactatttt 30111844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 48633760 - 48633809
Alignment:
Q  134 tttaagattttgagggattttacctcatagacttttaaagatttgaaagta 184  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||||||||||    
T  48633760 tttaagattttgagagattttaactcatagactttt-aagatttgaaagta 48633809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 28343414 - 28343367
Alignment:
Q  16 aaaaattaaggggctgtattggattgagattttaaaagactattttaa 63  Q
    |||| ||| |||| |||||||||||| |||||||||||||||||||||    
T  28343414 aaaacttaggggggtgtattggattgggattttaaaagactattttaa 28343367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 510743 - 510705
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactattttaa 63  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  510743 gggggtgtattggattgggattttaaaagactattttaa 510705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 3024022 - 3023981
Alignment:
Q  22 taaggggctgtattggattgagattttaaaagactattttaa 63  Q
    ||||||| |||||||||||  |||||||||||||||||||||    
T  3024022 taagggggtgtattggattaggattttaaaagactattttaa 3023981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 12252381 - 12252414
Alignment:
Q  21 ttaaggggctgtattggattgagattttaaaaga 54  Q
    |||||||| |||||||||||||||||||||||||    
T  12252381 ttaagggggtgtattggattgagattttaaaaga 12252414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 12741464 - 12741431
Alignment:
Q  30 tgtattggattgagattttaaaagactattttaa 63  Q
    ||||||||||| ||||||||||||||||||||||    
T  12741464 tgtattggattaagattttaaaagactattttaa 12741431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 32884849 - 32884816
Alignment:
Q  30 tgtattggattgagattttaaaagactattttaa 63  Q
    ||||||||||| ||||||||||||||||||||||    
T  32884849 tgtattggattaagattttaaaagactattttaa 32884816  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 152948 - 152912
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactatttt 61  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  152948 gggggtgtattggattgagattttaaaagactgtttt 152912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 24 - 242
Target Start/End: Original strand, 6827950 - 6828170
Alignment:
Q  24 aggggctgtattggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttcaagggat 123  Q
    ||||| ||||||||||||||||||||||||| |||||| ||          ||||||||| ||||||||||||| |||||||||||||||||||| ||||    
T  6827950 agggggtgtattggattgagattttaaaagattattttgacaaaaaaaagttttgaagatcttaaaagattgtggaggaatgtattaactttcaaaggat 6828049  T
Q  124 tttaaaataattt-aagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatgactgttaaa 221  Q
    ||||||| | ||| ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| | |||    
T  6828050 tttaaaagacttttaagattttgagggattttagctcataaacttctaaagatttgaaagtattttataagaattcataagatttgaaatgactatcaaa 6828149  T
Q  222 gtttagcaataattcaaaatt 242  Q
     ||||||||||||| ||||||    
T  6828150 ttttagcaataattaaaaatt 6828170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 215
Target Start/End: Original strand, 6901354 - 6901546
Alignment:
Q  24 aggggctgtattggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttcaagggat 123  Q
    ||||| |||| |||||||||||||||||||||||||||  |       || ||||||||||||||||||||||| ||||||||| |||||||||||   |    
T  6901354 aggggatgtaatggattgagattttaaaagactattttggcaaaaaaagt-tttgaagattttaaaagattgtgtaggaatgta-taactttcaagattt 6901451  T
Q  124 tt-taaaata-atttaagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatgact 215  Q
    || ||||| |  ||||| |||| || |||||||| |||| ||| |||| || ||||||||||||||||| ||||||| | |||||| ||||||||    
T  6901452 ttataaaagacttttaaaatttcgaaggattttaactcaaagattttttaaaatttgaaagtattttatgagaattcgtaagatttaaaatgact 6901546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 26629508 - 26629547
Alignment:
Q  22 taaggggctgtattggattgagattttaaaagactatttt 61  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26629508 taaggggctgtattggattgagattttaaaagactatttt 26629547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 198
Target Start/End: Complemental strand, 7858136 - 7858016
Alignment:
Q  79 aagattttaaaagattgtgaaggaatgtattaactttcaagggattt-taaaataattt-aagattttgagggattttacctcatagacttttaaagatt 176  Q
    |||||||||||| |||||| |||||||||| | ||||||||   ||| ||||| | ||| |||||||  |||||||||| |||| ||| |||| || |||    
T  7858136 aagattttaaaatattgtgtaggaatgtatca-ctttcaagatttttataaaagacttttaagatttcaagggattttaactcaaagattttttaaaatt 7858038  T
Q  177 tgaaagtattttataagaattc 198  Q
    |||||||||||||| |||||||    
T  7858037 tgaaagtattttatgagaattc 7858016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 4239575 - 4239617
Alignment:
Q  21 ttaaggggctgtattggattgagattttaaaagactattttaa 63  Q
    |||||||| |||||||||||  |||||||||||||||||||||    
T  4239575 ttaagggggtgtattggattaggattttaaaagactattttaa 4239617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 40411506 - 40411469
Alignment:
Q  24 aggggctgtattggattgagattttaaaagactatttt 61  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  40411506 agggggtgtattggattgagattttaaaagactgtttt 40411469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 11632685 - 11632721
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactatttt 61  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  11632685 gggggtgtattggattgagattttaaaagactgtttt 11632721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 13949800 - 13949836
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactatttt 61  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  13949800 ggggatgtattggattgagattttaaaagactgtttt 13949836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 17519599 - 17519567
Alignment:
Q  30 tgtattggattgagattttaaaagactatttta 62  Q
    ||||||||||| |||||||||||||||||||||    
T  17519599 tgtattggattaagattttaaaagactatttta 17519567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 30 - 242
Target Start/End: Complemental strand, 27594029 - 27593815
Alignment:
Q  30 tgtattggattgagattttaaaagactattttaacnnnnnnn-gtctttgaagattttaaaagattgtgaaggaatgtattaactttcaagggattttaa 128  Q
    |||||||||||||||||||||||||||||||| ||        ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  27594029 tgtattggattgagattttaaaagactattttgacaaaaaaaagtctt-gaagattttaaaagattgtggaggaatgtattaactttcaaaggattttaa 27593931  T
Q  129 aataattt-aagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatgactgttaaagttta 226  Q
    || | ||| |||||||||||||||||||  ||||  ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | ||| ||||    
T  27593930 aagacttttaagattttgagggattttagttcatgaacttttaaagatttgaaagtattttatgagaattcataagatttgaaatgactatcaaatttta 27593831  T
Q  227 gcaataattcaaaatt 242  Q
    ||||||||||||||||    
T  27593830 gcaataattcaaaatt 27593815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 134 - 242
Target Start/End: Original strand, 39337520 - 39337629
Alignment:
Q  134 tttaagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatgactgttaaagtttagcaata 232  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | ||| ||||||||||    
T  39337520 tttaagattttgagggattttagctcatagacttttaaagatttgaaagtattttatgagaattcataagatttgaaatgactatcaaattttagcaata 39337619  T
Q  233 attcaaaatt 242  Q
    ||||||||||    
T  39337620 attcaaaatt 39337629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 76 - 242
Target Start/End: Original strand, 6783238 - 6783404
Alignment:
Q  76 ttgaagattttaaaagattgtgaaggaatgtattaactttcaagggattttaaaataatt-taagattttgagggattttacctcatagacttttaaaga 174  Q
    |||||||||| |||  |||||| ||||||||||||||||||||| |||||||||| | || ||||||||  |||||||||| |||||| |||||| ||||    
T  6783238 ttgaagatttaaaagaattgtggaggaatgtattaactttcaagagattttaaaagacttgtaagatttcaagggattttagctcataaactttt-aaga 6783336  T
Q  175 tttgaaagtattttataagaattcat-agatttgaaatgactgttaaagtttagcaataattcaaaatt 242  Q
    |||||||||||||||| |||| |||| | ||||||||||||| | ||| ||||||||||||| ||||||    
T  6783337 tttgaaagtattttatgagaa-tcataaaatttgaaatgactataaaattttagcaataatttaaaatt 6783404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 43152112 - 43151945
Alignment:
Q  30 tgtattggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttcaagggattttaaa 129  Q
    ||||||||||||||||||||||||||||||||| |       ||||| |||||||||||||||||||| ||||||||||||| |||||||              
T  43152112 tgtattggattgagattttaaaagactattttagcaaacaaagtctt-gaagattttaaaagattgtgtaggaatgtattaattttcaag---------- 43152024  T
Q  130 ataatttaagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatgact 215  Q
           ||  ||||||||||||||| |||| |||||||| |||||||||||||| ||||| | ||||||| |||||||||| ||||    
T  43152023 -------aaacttttgagggattttaactcaaagactttt-aagatttgaaagtactttatgaaaattcatgagatttgaaacgact 43151945  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 28845718 - 28845611
Alignment:
Q  24 aggggctgtattggattgagattttaaaagactattttaacnnnnnnn--gtctttgaagattttaaaagattgtgaaggaatgtattaactttcaaggg 121  Q
    ||||| |||||||||||||| ||||||||||||||||| ||         ||||| |||||||||||||| ||||| | ||||||||||| |||||| ||    
T  28845718 agggggtgtattggattgaggttttaaaagactattttgacaaaaaaaaagtctt-gaagattttaaaaggttgtggaagaatgtattaattttcaaagg 28845620  T
Q  122 attttaaaa 130  Q
    |||||||||    
T  28845619 attttaaaa 28845611  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 33417156 - 33417116
Alignment:
Q  21 ttaaggggctgtattggattgagattttaaaagactatttt 61  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  33417156 ttaagggagtgtattggattgagattttaaaagactatttt 33417116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 36054009 - 36054045
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactatttt 61  Q
    |||| ||||||||||||||||||||||||||||||||    
T  36054009 gggggtgtattggattgagattttaaaagactatttt 36054045  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 215
Target Start/End: Complemental strand, 48377931 - 48377796
Alignment:
Q  82 attttaaaagattgtgaaggaatgtattaactttcaagggattt-taaaataatt-taagattttgagggattttacctcatagacttttaaagatttga 179  Q
    ||||| |||||||||| | |||||||||||||||||||   ||| ||||| | || | || ||| || |||||||| ||  |||||||| ||||||||||    
T  48377931 atttttaaagattgtgtaagaatgtattaactttcaagatttttgtaaaagacttatgaggtttggacggattttaactattagacttt-aaagatttga 48377833  T
Q  180 aagtattttataagaattcat-agatttgaaatgact 215  Q
    ||||||||| | ||||||||| |||||| ||||||||    
T  48377832 aagtattttgtgagaattcataagatttaaaatgact 48377796  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 10728120 - 10728162
Alignment:
Q  21 ttaaggggctgtattggattgagattttaaaagactattttaa 63  Q
    |||||||| |||||||||||  |||||||||||||||||||||    
T  10728120 ttaagggggtgtattggattaggattttaaaagactattttaa 10728162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 23698066 - 23698032
Alignment:
Q  18 aaattaaggggctgtattggattgagattttaaaa 52  Q
    ||||||||||| |||||||||||||||||||||||    
T  23698066 aaattaagggggtgtattggattgagattttaaaa 23698032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 23716521 - 23716487
Alignment:
Q  18 aaattaaggggctgtattggattgagattttaaaa 52  Q
    ||||||||||| |||||||||||||||||||||||    
T  23716521 aaattaagggggtgtattggattgagattttaaaa 23716487  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 23734977 - 23734943
Alignment:
Q  18 aaattaaggggctgtattggattgagattttaaaa 52  Q
    ||||||||||| |||||||||||||||||||||||    
T  23734977 aaattaagggggtgtattggattgagattttaaaa 23734943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 24149830 - 24149872
Alignment:
Q  19 aattaaggggctgtattggattgagattttaaaagactatttt 61  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||    
T  24149830 aatttagggggtgtattggattaagattttaaaagactatttt 24149872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 31645359 - 31645401
Alignment:
Q  21 ttaaggggctgtattggattgagattttaaaagactattttaa 63  Q
    |||||||| ||||||||||| |||||||||||||| |||||||    
T  31645359 ttaagggggtgtattggattaagattttaaaagacaattttaa 31645401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 50902417 - 50902455
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactattttaa 63  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  50902417 gggggtgtattggattaagattttaaaagactattttaa 50902455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 17947318 - 17947277
Alignment:
Q  22 taaggggctgtattggattgagattttaaaagactattttaa 63  Q
    ||||||| |||||||||||  |||||||||||||||||||||    
T  17947318 taagggggtgtattggattaggattttaaaagactattttaa 17947277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 24573427 - 24573468
Alignment:
Q  20 attaaggggctgtattggattgagattttaaaagactatttt 61  Q
    ||||||||| |||||||||||| |||||||||||| ||||||    
T  24573427 attaagggggtgtattggattgggattttaaaagattatttt 24573468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 26292562 - 26292599
Alignment:
Q  24 aggggctgtattggattgagattttaaaagactatttt 61  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  26292562 agggggtgtattggattgagattttaaaagactgtttt 26292599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 44904961 - 44904994
Alignment:
Q  30 tgtattggattgagattttaaaagactattttaa 63  Q
    ||||||||||| ||||||||||||||||||||||    
T  44904961 tgtattggattaagattttaaaagactattttaa 44904994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 2124704 - 2124740
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactatttt 61  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  2124704 gggggtgtattggattgagattttaaaagactgtttt 2124740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 11432648 - 11432604
Alignment:
Q  19 aattaaggggctgtattggattgagattttaaaagactattttaa 63  Q
    |||| ||||| |||||||||||  |||||||||||||||||||||    
T  11432648 aatttagggggtgtattggattaggattttaaaagactattttaa 11432604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 23754641 - 23754605
Alignment:
Q  18 aaattaaggggctgtattggattgagattttaaaaga 54  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  23754641 aaattaaaggggtgtattggattgagattttaaaaga 23754605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 26004847 - 26004883
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactatttt 61  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  26004847 gggggtgtattggattgagattttaaaagactgtttt 26004883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 26556954 - 26556918
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactatttt 61  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  26556954 gggggtgtattggattgagattttaaaagactgtttt 26556918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 30589932 - 30589896
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactatttt 61  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  30589932 gggggtgtattggattgagattttaaaagactgtttt 30589896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 76 - 242
Target Start/End: Original strand, 10643211 - 10643379
Alignment:
Q  76 ttgaagattttaaaagattgtgaaggaatgtattaactttcaagggattttaaaataattt-aagattttgagggattttacctcatagacttttaaaga 174  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | ||| ||||||||||||||||||| |||||| |||| |||| |    
T  10643211 ttgaagattttaaaagattgtggaggaatgtattaactttcaaaggattttaaaagacttttaagattttgagggattttagctcataaacttataaaaa 10643310  T
Q  175 tttgaaagtattttataagaattcat-agatttgaaatgactgttaaagtttagcaataattcaaaatt 242  Q
    |||||||| ||||||||||||||||| ||||||||||||||| | ||| ||||||||||||||||||||    
T  10643311 tttgaaagaattttataagaattcataagatttgaaatgactatcaaattttagcaataattcaaaatt 10643379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 35165735 - 35165518
Alignment:
Q  18 aaattaagg-ggctgtattggattgagattttaaaagactattttaacnnnnnnngtctttgaagattttaaaagattgtgaaggaatgtattaactttc 116  Q
    ||||||||| || ||||||||||||||||||||||||||||||||          ||| | |||||||||||||||||||| |||||||  |||||||||    
T  35165735 aaattaaggagggtgtattggattgagattttaaaagactattttggtaaaaaaagtcat-gaagattttaaaagattgtgtaggaatgccttaactttc 35165637  T
Q  117 aagggattttaaaataatttaagattttgagggattttacctcatagacttttaaagatttgaaagtattttataagaattcat-agatttgaaatga-- 213  Q
    |||  |||||        || |||||||||||||||||| |||| | ||||||||||||||||||||| |||||  |||||| | |||||||||||||      
T  35165636 aag--atttt--------tttagattttgagggattttaactcaaaaacttttaaagatttgaaagtactttatgtgaattcctaagatttgaaatgact 35165547  T
Q  214 ctgttaaagtttagcaataattcaaaatt 242  Q
    || ||||| ||||| || |||||||||||    
T  35165546 ctattaaattttagaaaaaattcaaaatt 35165518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 10008374 - 10008410
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactatttt 61  Q
    |||| ||||||||||||||||||||||||||||||||    
T  10008374 gggggtgtattggattgagattttaaaagactatttt 10008410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 3109348 - 3109385
Alignment:
Q  24 aggggctgtattggattgagattttaaaagactatttt 61  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  3109348 agggggtgtattggattgagattttaaaagactgtttt 3109385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 7498197 - 7498157
Alignment:
Q  23 aaggggctgtattggattgagattttaaaagactattttaa 63  Q
    |||||| |||||||||||  |||||||||||||||||||||    
T  7498197 aagggggtgtattggattaggattttaaaagactattttaa 7498157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 29864751 - 29864787
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactatttt 61  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  29864751 gggggtgtattggattgagattttaaaagactgtttt 29864787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 33820 - 33860
Alignment:
Q  21 ttaaggggctgtattggattgagattttaaaagactatttt 61  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  33820 ttaagggggtgtattggattgagattttaaaagactttttt 33860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0940 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0940
Description:

Target: scaffold0940; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 3565 - 3611
Alignment:
Q  17 aaaattaaggggctgtattggattgagattttaaaagactattttaa 63  Q
    |||| ||||||| |||||||||||  |||||||||||||||||||||    
T  3565 aaaactaagggggtgtattggattaggattttaaaagactattttaa 3611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 12134 - 12094
Alignment:
Q  22 taaggggctgtattggattgagattttaaaagactatttta 62  Q
    ||||||| |||||||||||  ||||||||||||||||||||    
T  12134 taagggggtgtattggattaggattttaaaagactatttta 12094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 20446 - 20482
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactatttt 61  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  20446 gggggtgtattggattgagattttaaaagactgtttt 20482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 80792 - 80828
Alignment:
Q  25 ggggctgtattggattgagattttaaaagactatttt 61  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  80792 gggggtgtattggattgagattttaaaagactttttt 80828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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