View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_76 (Length: 296)
Name: NF6453A_low_76
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 11592694 - 11592401
Alignment:
| Q |
1 |
aaacgtttaaggaacatgttgttcacaacgtgaccgaagcgaaagacggtgtgaagaagtttatgtcattatcaatggagagagttgaatcattgatgag |
100 |
Q |
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| T |
11592694 |
aaacgtttaaagaacatgttgttcacaacgtgaccgaggcgaaagacggtgtgaagaagtttatgtcattatcaatggagagagttgaatcattgatgag |
11592595 |
T |
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| Q |
101 |
tttgttgaatttattgggattttcaagtggttatggaatgaatgtttggataacatttgtttctagttatgttttgtctagggttatgccaagacaacaa |
200 |
Q |
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| T |
11592594 |
tttgttgaatttgttgggattttcaagtggttatggaatgaatgtttggatcacatttgtttctagttatgttttgtctagggttatgccaagacaacaa |
11592495 |
T |
|
| Q |
201 |
tttgctgtggtccagagtaagatttatcctgtttattttagggctatgggttattgtttattggttgctttgttgggtcattttcttcgacatg |
294 |
Q |
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| T |
11592494 |
tttgctgtggtccagagtaagatttatcctgtttattttagggctatgggttattgtttattggttgctttgttgggtcatgtttttggacatg |
11592401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 11645425 - 11645718
Alignment:
| Q |
1 |
aaacgtttaaggaacatgttgttcacaacgtgaccgaagcgaaagacggtgtgaagaagtttatgtcattatcaatggagagagttgaatcattgatgag |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11645425 |
aaacgtttaaagaacatgttgttcacaacgtgaccgaggcgaaagacggtgtgaagaagtttatgtcattatcaatggagagagttgaatcattgatgag |
11645524 |
T |
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| Q |
101 |
tttgttgaatttattgggattttcaagtggttatggaatgaatgtttggataacatttgtttctagttatgttttgtctagggttatgccaagacaacaa |
200 |
Q |
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| T |
11645525 |
tttgttgaatttgttgggattttcaagtggttatggaatgaatgtttggatcacatttgtttctagttatgttttgtctagggttatgccaagacaacaa |
11645624 |
T |
|
| Q |
201 |
tttgctgtggtccagagtaagatttatcctgtttattttagggctatgggttattgtttattggttgctttgttgggtcattttcttcgacatg |
294 |
Q |
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| T |
11645625 |
tttgctgtggtccagagtaagatttatcctgtttattttagggctatgggttattgtttattggttgctttgttgggtcatgtttttggacatg |
11645718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 37180943 - 37181056
Alignment:
| Q |
27 |
aacgtgaccgaagcgaaagacggtgtgaagaagtttatgtcattatcaatggagagagttgaatcattgatgagtttgttgaatttatt-gggattttca |
125 |
Q |
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||||||||||| | |||||||||| ||||||||| |||||||||| |||||||||||||||||||||| || ||||||||| || ||||||| || |
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| T |
37180943 |
aacgtgaccgagacataagacggtgtaaagaagtttgtgtcattatctatggagagagttgaatcattgacgaaagagttgaatttgttagggatttgca |
37181042 |
T |
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| Q |
126 |
agtggttatggaat |
139 |
Q |
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|||||||||||||| |
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| T |
37181043 |
agtggttatggaat |
37181056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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