View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_79 (Length: 291)
Name: NF6453A_low_79
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_79 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 43233443 - 43233161
Alignment:
| Q |
8 |
gagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattacaat |
107 |
Q |
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| T |
43233443 |
gagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattacaat |
43233344 |
T |
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| Q |
108 |
tgaaagaaatacatttgatttgaaacatatgagtaaacaaaattggtaatcctctatgtatt---gctgatattggacacctaaacaaacttgcatccca |
204 |
Q |
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| T |
43233343 |
tgaaagaaatacatttgatttgaaacatatgagtaaacaaaattggtaatcctctatgtattgctgctgatattggacacctaaacaaacttgcatccga |
43233244 |
T |
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| Q |
205 |
aatttaatttgaaagggtgacactgccaacttttcccactccttatactttgctctatttgaatcattgatttctccaacaactttt |
291 |
Q |
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| T |
43233243 |
aat----tttgaaagggtgacactgccaacttttcccactccttatactttgctctatttgaatcattgttttctccaacatctttt |
43233161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 31982640 - 31982589
Alignment:
| Q |
215 |
gaaagggtgacactgccaacttttcccactccttatactttgctctatttga |
266 |
Q |
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| T |
31982640 |
gaaagggtgacactgcctacttttcccactctttatacgttactctatttga |
31982589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 31982982 - 31982922
Alignment:
| Q |
82 |
acttgcaggggtgacaaaattacaattgaaagaaatacatttgatttgaaacatatgagta |
142 |
Q |
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| T |
31982982 |
acttgcaggtgtgacaaagttacaattgaaagaaaaacattagattcaaaacgtatgagta |
31982922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 8024395 - 8024261
Alignment:
| Q |
8 |
gagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattacaat |
107 |
Q |
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| T |
8024395 |
gagaagaaaaataaacttgtagcatagacttcaagtcaacctgaaatgaattcaaaaaggttgtaggtaaaaaaacttgcaggtgggacaaagttaccat |
8024296 |
T |
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| Q |
108 |
tgaaagaaatacatttgatttgaaacatatgagta |
142 |
Q |
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| T |
8024295 |
tgaaagaaaaacattagattcaaaacgtatgagta |
8024261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 8023595 - 8023544
Alignment:
| Q |
215 |
gaaagggtgacactgccaacttttcccactccttatactttgctctatttga |
266 |
Q |
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| T |
8023595 |
gaaagggtgacactgcctacttttcccactctttatacgttactctatttga |
8023544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 18647618 - 18647484
Alignment:
| Q |
8 |
gagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattacaat |
107 |
Q |
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| T |
18647618 |
gagaagaaaaataaacttgtagcatagacttcaagtcaacctgaaatgaattcaaaaaggttgtaggtaaaaaaacttgcaggtgggacaaagttaccat |
18647519 |
T |
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| Q |
108 |
tgaaagaaatacatttgatttgaaacatatgagta |
142 |
Q |
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| T |
18647518 |
tgaaagaaaatcattagattcaaaacgtatgagta |
18647484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 18646821 - 18646770
Alignment:
| Q |
215 |
gaaagggtgacactgccaacttttcccactccttatactttgctctatttga |
266 |
Q |
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| T |
18646821 |
gaaagggtgacactgcctacttttcccactctttatacgttactctatttga |
18646770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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