View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_82 (Length: 289)
Name: NF6453A_low_82
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 8783030 - 8783307
Alignment:
| Q |
7 |
taaggtattttatttggcttttgaattataataaaagccgaatgagacttgggagtgctatgtctggtttttgtggaaatattatcgaaaatagtttgca |
106 |
Q |
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| T |
8783030 |
taaggtattttatttggcttttgaattataataaaagtcgaatgagacttgggagtgctatgtgtggtttttgtggaaatattatcgaaaatagtttgca |
8783129 |
T |
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| Q |
107 |
tgagttgcgagattgcccacttgttatgcctatgtaattaaatgttgtgcctgttaatatgagagatagattctttatagggggtcttaatcagtggata |
206 |
Q |
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| T |
8783130 |
tgtgttgcgaggttgcccacttgttatgcctatgtggttaaatgttgtgcctgttaatatgagagatagattctttatagggggtcttaatcagtggata |
8783229 |
T |
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| Q |
207 |
gcttttaatatgaggaagaggcggggtggatgcttgaggttgattggaacgatttttgggctatggctggtcattgtt |
284 |
Q |
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| T |
8783230 |
gcttttaatatgaggaagaggcaaggtggatgcttgaggttgattgaaacgatttttgggctatggcttgtcattgtt |
8783307 |
T |
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Back To:
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Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 165 - 284
Target Start/End: Original strand, 27850927 - 27851047
Alignment:
| Q |
165 |
atgagagatagattctttatagggggtcttaatcagtggatagcttttaatatgaggaa-gaggcggggtggatgcttgaggttgattggaacgattttt |
263 |
Q |
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||||||||||||||||||||||||| |||| | ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |
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| T |
27850927 |
atgagagatagattctttataggggatctttaccagtggataacttttaatatgaggaatgagaaggggtggatgcttgaggttgattggaaagattttt |
27851026 |
T |
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| Q |
264 |
gggctatggctggtcattgtt |
284 |
Q |
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| T |
27851027 |
gggctatagcttgtcattgtt |
27851047 |
T |
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