View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_92 (Length: 274)
Name: NF6453A_low_92
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_92 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 9215419 - 9215677
Alignment:
| Q |
11 |
ttatactgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaa |
110 |
Q |
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| T |
9215419 |
ttattctgtgagatttggaatgacatttgtggattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaa |
9215518 |
T |
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| Q |
111 |
gaaactaaacttatgtttcttgtgagaaaagttattagttttattcattnnnnnnnttatttgtaaaaatctatttattctttattcattattttgttct |
210 |
Q |
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| T |
9215519 |
gaaactaaacttatgtttcttgtgagaaaagttattagttttattcattaaaaaatttatttgtaaatatttatttattctttattcattattttgttct |
9215618 |
T |
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| Q |
211 |
aaagaggtcctattcaaccgaaaagggagtgaaacatggatgtgtagatatactgatct |
269 |
Q |
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| T |
9215619 |
aaagaggtcctattcaaccaaaaagggaatgaaacatggatgtgtagatatactgatct |
9215677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 25158921 - 25158783
Alignment:
| Q |
21 |
agatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaagaaactaaac |
120 |
Q |
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| T |
25158921 |
agatttggaatgacctttgttgattataagaatggcttgaaaagataccagaagttgtctgcattgtggtttaagaattttctcaaaaaagaaactaagc |
25158822 |
T |
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| Q |
121 |
ttatgtttcttgtgagaaaagttattagttttattcatt |
159 |
Q |
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| T |
25158821 |
ttatgtttctaatgagaaaggttatgagattcattcatt |
25158783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 25253914 - 25254006
Alignment:
| Q |
11 |
ttatactgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttct |
103 |
Q |
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| T |
25253914 |
ttatactgtgagatttggaatgacctttgtagattacaaaaatggtttgaaaagatatcaaaagctctcagggttgtggttcaagaattttct |
25254006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 25179095 - 25179001
Alignment:
| Q |
11 |
ttatactgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctca |
105 |
Q |
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| T |
25179095 |
ttatactgtgagatttggaatgacttttatagattacaaagatggtttgaaaagatatcaaaagctttcaggattgtggttcaagaattttctca |
25179001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 25167393 - 25167300
Alignment:
| Q |
11 |
ttatactgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctc |
104 |
Q |
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| T |
25167393 |
ttatactgtgagatttggaatgacattcgtagattacaaaaatggtttgaaaagatatcaaaagctctcgggattgtggttccagaattttctc |
25167300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 30363107 - 30363156
Alignment:
| Q |
18 |
gtgagatttggaatgacctttgtagattacaagaatggtttgaaaagata |
67 |
Q |
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| T |
30363107 |
gtgaggtttggaatgaactttgtagattacaacaatgacttgaaaagata |
30363156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 42292576 - 42292664
Alignment:
| Q |
22 |
gatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaa |
110 |
Q |
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||||||| |||| ||||| |||||||| ||||||||||||||| || | || | || ||| ||||||| | |||||||||||||||| |
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| T |
42292576 |
gatttggcatgaattttgtggattacaaaaatggtttgaaaagacaccaaaagttgtcggcaatgtggtttacgaattttctcaaaaaa |
42292664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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