View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_93 (Length: 272)
Name: NF6453A_low_93
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_93 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 27 - 272
Target Start/End: Complemental strand, 3036837 - 3036591
Alignment:
| Q |
27 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttc-cccat |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3036837 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttttcccat |
3036738 |
T |
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| Q |
126 |
aggggacattcattctgatagtgtcccagctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctgaac |
225 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3036737 |
aggggacattcattctgatagtgtcccagcttgtgacacttataacactcaatagaatctttgttgattcttcccctaccctttcctctagcacctgaat |
3036638 |
T |
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| Q |
226 |
gccctcttcccctaccaaatcccatagatcctcttcctccattcgaa |
272 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
3036637 |
gccctcttcctctaccatatcccatagatcctcttcctccattcgaa |
3036591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 27 - 268
Target Start/End: Complemental strand, 16863584 - 16863342
Alignment:
| Q |
27 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata |
126 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | | |||| | |||||||| | |||||| |
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| T |
16863584 |
aaccatacctcatctttggcatttgtgttcaaacatgattgagccatcagaagcaattcaccatcttcaaactcaacatagtgtgcattttcttcccata |
16863485 |
T |
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| Q |
127 |
ggggacattcattctgatagtgtcccagctcgtgacac-ttataacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctgaac |
225 |
Q |
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| ||||||||||| |||||||||||||||| ||||||| || || || |||| | | |||| |||||||| |||||| |||||||| ||||||||| |
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| T |
16863484 |
gaggacattcattttgatagtgtcccagcttgtgacactttgtagcattcaacacttccattgttaattcttcctctaccccttcctctaacacctgaac |
16863385 |
T |
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| Q |
226 |
gccctcttcccctaccaaatcccatagatcctcttcctccatt |
268 |
Q |
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| T |
16863384 |
gccctcttcctctaccatatcctacagatcctcttccaccatt |
16863342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 20542511 - 20542323
Alignment:
| Q |
27 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata |
126 |
Q |
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|||||||||||||||||||| |||||||||| ||| ||||||||||| ||||| ||||||||||||||||| | |||| | || ||||||| | |||||| |
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| T |
20542511 |
aaccatacctcatctttggcgtttgtgttcaagcaagattgagccataagaagtaattcaccatcttcaaactcagcaaagttagcattttcttcccata |
20542412 |
T |
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| Q |
127 |
ggggacattcattctgatagtgtcccagctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctcta |
215 |
Q |
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| T |
20542411 |
gaggacactcattctgatagtgtcccagcttgtgacacttgaaacactcaacacttgctttgttgattcttcctctgccccttcctcta |
20542323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 168
Target Start/End: Complemental strand, 20529205 - 20529064
Alignment:
| Q |
27 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata |
126 |
Q |
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|||||||||||||||||| |||||||||||| |||| ||||||||| ||| | ||||||||||||||||||| ||||||||||| |||| | |||||| |
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| T |
20529205 |
aaccatacctcatctttgacatttgtgttcaatcatgtttgagccatgagatgaaattcaccatcttcaaattcagcataatttgaatttggttcccata |
20529106 |
T |
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| Q |
127 |
ggggacattcattctgatagtgtcccagctcgtgacacttat |
168 |
Q |
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| T |
20529105 |
gatgacattcattctgatagtgtcctagcttgtgacacttat |
20529064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 177
Target Start/End: Original strand, 40612799 - 40612949
Alignment:
| Q |
27 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata |
126 |
Q |
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|||||||||||||||||||| |||||||||| ||| ||||| ||||| ||||| ||||||||||||||||| | |||| | || ||||||| | |||||| |
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| T |
40612799 |
aaccatacctcatctttggcgtttgtgttcaagcaagattgggccataagaagtaattcaccatcttcaaacttagcaaagttagcattttcttcccata |
40612898 |
T |
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| Q |
127 |
ggggacattcattctgatagtgtcccagctcgtgacacttataacactcaa |
177 |
Q |
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| T |
40612899 |
gaggacactcattctggtagtgtcccaacttgcgacacttaaaacactcaa |
40612949 |
T |
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