View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453A_low_98 (Length: 268)
Name: NF6453A_low_98
Description: NF6453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453A_low_98 |
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Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 105 - 265
Target Start/End: Original strand, 40758314 - 40758474
Alignment:
| Q |
105 |
taagcactgtgatattattgatgttgaaagaactgttatgctgatgttatttataccgaaagaataatgtatacacaaggaatctatttttaatagattt |
204 |
Q |
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| T |
40758314 |
taagcattgtgatattattgatgttgaaagaattgttatgctgatgttatttatactgaaagaataatgtatacacaaggaatctattttcaatagattt |
40758413 |
T |
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| Q |
205 |
aacattaaaatattacaatggaaaatccagtcaaattttgtgcaagaccgcagtagtaact |
265 |
Q |
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| T |
40758414 |
aacattaaaatattacaatggaaaatccagtcaaattttgtgcaagaccgcagtagtaact |
40758474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 40758224 - 40758262
Alignment:
| Q |
15 |
agagacatcagacatgagataaatgatcaaaccactgcc |
53 |
Q |
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| T |
40758224 |
agagacatcagacatgagatgaatgatcaaaccactgcc |
40758262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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