View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6453_high_15 (Length: 244)
Name: NF6453_high_15
Description: NF6453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 27744542 - 27744315
Alignment:
| Q |
1 |
tctactttgtagtaatggcgaagaaaatcagattttaaagtgaggttgttttctatatacctgcctctcttgtcgattggtgcagaataagagaaaaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27744542 |
tctactttgtagtaatggcgaagaaaatcagattttaaagtgaggttgttttctatatacctgcctctcttgtcgattggtgcagaataagagaaaaaag |
27744443 |
T |
|
| Q |
101 |
aattgtcattgaacatgtgcttgaagcgagagtcaattgccacttttgtttcatcctttcgagcctctcgaaaacgagggtctgtgtgcattcctacaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27744442 |
aattgtcattgaacatgtgcttgaagcgagagtcaattgccacttttgtttcatcctttcgagcctctcgaaaacgagggtctgtgtgcattcctacaaa |
27744343 |
T |
|
| Q |
201 |
tcgaggatcactgataagcttcttcttc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
27744342 |
tcgaggatcactgataagcttcttcttc |
27744315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 49513391 - 49513337
Alignment:
| Q |
1 |
tctactttgtagtaatggcgaagaaaatcagattttaaagtgaggttgttttcta |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
49513391 |
tctactttgtagtaatggcgaagaaaatcagatttaaaagtgaggttgttttcta |
49513337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 49513321 - 49513261
Alignment:
| Q |
168 |
tcgaaaacgagggtctgtgtgcattcctacaaatcgaggatcactgataagcttcttcttc |
228 |
Q |
| |
|
||||||| ||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
49513321 |
tcgaaaaagagggtctgtgagcactcctacaaaccgaggatcattgataagcttcttcttc |
49513261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University