View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6453_high_18 (Length: 240)

Name: NF6453_high_18
Description: NF6453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6453_high_18
NF6453_high_18
[»] chr6 (20 HSPs)
chr6 (17-240)||(28097221-28097444)
chr6 (29-210)||(29827197-29827378)
chr6 (38-229)||(26950935-26951126)
chr6 (85-233)||(28140723-28140871)
chr6 (116-209)||(28186606-28186699)
chr6 (119-210)||(28326689-28326780)
chr6 (119-210)||(28504325-28504416)
chr6 (119-229)||(26636838-26636948)
chr6 (119-229)||(26742804-26742914)
chr6 (32-232)||(29842785-29842985)
chr6 (119-210)||(26849923-26850014)
chr6 (135-229)||(25075059-25075153)
chr6 (119-229)||(26960317-26960427)
chr6 (116-190)||(28296617-28296691)
chr6 (116-190)||(28515382-28515456)
chr6 (32-162)||(27697379-27697509)
chr6 (133-230)||(26812719-26812816)
chr6 (136-209)||(29476962-29477035)
chr6 (133-229)||(27664108-27664204)
chr6 (116-200)||(28244016-28244100)
[»] chr2 (2 HSPs)
chr2 (32-234)||(3280846-3281048)
chr2 (133-230)||(17992109-17992206)
[»] chr5 (1 HSPs)
chr5 (17-190)||(16692098-16692271)
[»] scaffold0019 (1 HSPs)
scaffold0019 (17-209)||(57072-57264)
[»] chr4 (1 HSPs)
chr4 (61-224)||(5089772-5089935)
[»] chr8 (1 HSPs)
chr8 (17-190)||(31906285-31906458)
[»] scaffold0038 (1 HSPs)
scaffold0038 (116-200)||(44178-44262)
[»] chr1 (1 HSPs)
chr1 (133-225)||(26137084-26137176)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 28097221 - 28097444
Alignment:
Q  17 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097221 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 28097320  T
Q  117 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097321 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactc 28097420  T
Q  217 ataacttgaatcaacttgtttagc 240  Q
    ||||||||||||||||||||||||    
T  28097421 ataacttgaatcaacttgtttagc 28097444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 29827378 - 29827197
Alignment:
Q  29 tcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttcta 128  Q
    |||||||||||||||||||||||||| |    |||||| ||||| ||||||| | ||||||| |||||||||| ||| || | ||| |||||||||||||    
T  29827378 tcatcttcctccaaagcatcaaaacttattttaagtatattttggatctctttattaggaatcctttcatatctatctaatatagatttccattcttcta 29827279  T
Q  129 tatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaat 210  Q
    ||| ||||||| ||||   || ||||| || ||| ||  |||| |||||||||| |||||||  ||||||||||| ||||||    
T  29827278 tattctttccaaacaacgcgggacctactaattctaaaaccaacggaaggccagaagcataagctattgcacggtctaaaat 29827197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 26951126 - 26950935
Alignment:
Q  38 tccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttc 137  Q
    |||||||||||||| || ||   |||||| ||||| || ||||||   ||||||||||||||   ||| || ||||| |  |||||| |||||  |||||    
T  26951126 tccaaagcatcaaagcttactttaagtatcttttggatatcttcatgtggaattctttcatacttatctaataaagactcacattctgctatagtctttc 26951027  T
Q  138 catacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttgaatca 229  Q
    || ||||||| ||||| | || ||| || || |||||||||||||||||||| || | |||||||||||||||||  ||||| |||||||||    
T  26951026 caaacaagttagaacccactacttctaaagctaatggaaggccagcagcatatttaactgcacggtttaaaatactatcataccttgaatca 26950935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 85 - 233
Target Start/End: Complemental strand, 28140871 - 28140723
Alignment:
Q  85 aggaattctttcatatcgatccaacaaagaattccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagca 184  Q
    |||||| |||||||| ||||| ||   ||| ||||| || ||| ||||||||||| ||||| | ||||| | || ||| || ||||||||||||||||      
T  28140871 aggaatcctttcataccgatctaatgtagatttccactcatctttatgctttccaaacaagctagaaccaactacttctaaagccaatggaaggccagag 28140772  T
Q  185 gcataatttattgcacggtttaaaatacactcataacttgaatcaactt 233  Q
    |||||| | | |||||||||||||||   ||||||||||||||||||||    
T  28140771 gcataagtaactgcacggtttaaaatgtgctcataacttgaatcaactt 28140723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 28186699 - 28186606
Alignment:
Q  116 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaa 209  Q
    ||||||||| |||||| ||||||| ||||||||||||| | || ||| || |||||||||||||||| ||||||| ||| |||| ||| |||||    
T  28186699 ttccattctcctatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttactgcatggtgtaaaa 28186606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 28326780 - 28326689
Alignment:
Q  119 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaat 210  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||| || |||||||||||||||| ||||||| ||| ||||| || ||||||    
T  28326780 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttactgcacagtataaaat 28326689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 28504416 - 28504325
Alignment:
Q  119 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaat 210  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||| || |||||||||||||||| ||||||| ||| ||||| || ||||||    
T  28504416 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataagttactgcacagtataaaat 28504325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 26636948 - 26636838
Alignment:
Q  119 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcat 218  Q
    |||||| |||||  ||||||| ||||||||||||| | || ||| || || ||||||||||||| |||||| || | |||||||||||||||  | ||||    
T  26636948 cattctgctatactctttccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcatatttaactgcacggtttaaaatgtaatcat 26636849  T
Q  219 aacttgaatca 229  Q
    | |||||||||    
T  26636848 agcttgaatca 26636838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 26742914 - 26742804
Alignment:
Q  119 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcat 218  Q
    |||||| |||||  ||||||| ||||||||||||| | || ||| || || ||||||||||||| |||||| || | |||||||||||||||  | ||||    
T  26742914 cattctgctatactctttccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcatatttaactgcacggtttaaaatgtaatcat 26742815  T
Q  219 aacttgaatca 229  Q
    | |||||||||    
T  26742814 agcttgaatca 26742804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 29842785 - 29842985
Alignment:
Q  32 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 131  Q
    |||||||||||||||||||| || |    |||||| || || ||||||| | ||||||| |||||||| | ||| ||   ||| ||||||||||||||||    
T  29842785 tcttcctccaaagcatcaaagcttattttaagtatattgtggatctctttattaggaatcctttcatacctatctaatgtagatttccattcttctatat 29842884  T
Q  132 gctttccatacaa-gttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttgaatcaa 230  Q
     ||||||| |||| | |||| |||| || ||| ||  |||| |||||||||| |||||||  ||||||||||| ||||||    ||||| ||||||||||    
T  29842885 tctttccaaacaaagctgga-cctactaattctaaaaccaacggaaggccagaagcataagctattgcacggtctaaaatgtcatcatagcttgaatcaa 29842983  T
Q  231 ct 232  Q
    ||    
T  29842984 ct 29842985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 26850014 - 26849923
Alignment:
Q  119 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaat 210  Q
    ||||||||||||  ||||||| ||||||||||||| | || ||| || || ||||||||||||| |||||| || | |||||| ||||||||    
T  26850014 cattcttctatactctttccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcatatttaactgcacgatttaaaat 26849923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 25075153 - 25075059
Alignment:
Q  135 ttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttgaatca 229  Q
    ||||| ||||||||||||| |  | ||| || || ||||||||||||| |||||| || |||||||||||||||||  | ||||| |||||||||    
T  25075153 ttccaaacaagttggaacccacaacttctaaagctaatggaaggccagaagcatatttaattgcacggtttaaaatgtaatcatagcttgaatca 25075059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 26960427 - 26960317
Alignment:
Q  119 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcat 218  Q
    |||||| |||||  ||| ||| ||||||||||||| | || ||| || || ||||||||||||| |||||| || | |||||||||||||||  | ||||    
T  26960427 cattctgctatactcttgccaaacaagttggaacccactacttctaaagctaatggaaggccagaagcatatttaactgcacggtttaaaatgtaatcat 26960328  T
Q  219 aacttgaatca 229  Q
    | |||||||||    
T  26960327 agcttgaatca 26960317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 28296617 - 28296691
Alignment:
Q  116 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataa 190  Q
    |||||||||  ||||| ||||||| ||||||||||||| | || ||| || |||||||||||||||| |||||||    
T  28296617 ttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataa 28296691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 28515456 - 28515382
Alignment:
Q  116 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataa 190  Q
    |||||||||  ||||| ||||||| ||||||||||||| | || ||| || |||||||||||||||| |||||||    
T  28515456 ttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccagaagcataa 28515382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 27697379 - 27697509
Alignment:
Q  32 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 131  Q
    ||||| |||||||||||| | ||||| | |||||| ||||| ||||||| | | ||||| || ||||| | ||| || | | | |||||||||||||| |    
T  27697379 tcttcttccaaagcatcatagctcactctaagtatcttttggatctctttattgggaatcctgtcatacccatctaatatatacttccattcttctatgt 27697478  T
Q  132 gctttccatacaagttggaacctaatatttc 162  Q
     ||||||| ||||||| ||||| | ||||||    
T  27697479 tctttccaaacaagttagaacccactatttc 27697509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 26812816 - 26812719
Alignment:
Q  133 ctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttgaatcaa 230  Q
    ||||||| ||||||||||||| | || ||| |  || ||||||||||||| || ||| |||| ||| || ||||||||  | ||||||||||||||||    
T  26812816 ctttccaaacaagttggaacccactacttctatagctaatggaaggccagaagtatattttactgcgcgatttaaaatgtaatcataacttgaatcaa 26812719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 29476962 - 29477035
Alignment:
Q  136 tccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaa 209  Q
    |||| ||||| | ||||||| || |||||||||||||||||| || | ||||||| ||| ||| ||||||||||    
T  29476962 tccaaacaagcttgaacctattacttccaaggccaatggaagcccggaagcataagttactgctcggtttaaaa 29477035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 27664108 - 27664204
Alignment:
Q  133 ctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttgaatca 229  Q
    ||||||| ||||||||||||| | || ||  || || ||||||||||||| |||||| |  | |||||||||||||||| | ||||| || ||||||    
T  27664108 ctttccaaacaagttggaacccactacttttaaagctaatggaaggccagaagcatattcaactgcacggtttaaaatataatcatagctggaatca 27664204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 28244100 - 28244016
Alignment:
Q  116 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcac 200  Q
    ||||||||| ||||||  |||||| | ||||| ||||| | || ||| || |||||||||||||||| ||||||| ||| |||||    
T  28244100 ttccattctcctatattatttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcac 28244016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 32 - 234
Target Start/End: Complemental strand, 3281048 - 3280846
Alignment:
Q  32 tcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatat 131  Q
    ||||||||||||||||||||||||||   |||||| || |||||||||| | ||||||| ||||||||||||||||||||||||||||| |||| |||||    
T  3281048 tcttcctccaaagcatcaaaactcactttaagtatcttctgaatctctttattaggaatcctttcatatcgatccaacaaagaattccactcttttatat 3280949  T
Q  132 gctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttgaatcaac 231  Q
     ||||||| |||||||||||||||||| ||| || |||||||||||||||| ||||||||||| ||| ||||||| ||    |||||||||||||| |||    
T  3280948 tctttccaaacaagttggaacctaatacttctaatgccaatggaaggccagaagcataatttactgcgcggtttagaacgtgctcataacttgaattaac 3280849  T
Q  232 ttg 234  Q
    |||    
T  3280848 ttg 3280846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 17992109 - 17992206
Alignment:
Q  133 ctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttgaatcaa 230  Q
    ||||||| ||||||||||||| | || ||| || || ||||| |||||||||||||| || | | |||||||||||||| | | |||||| |||||||    
T  17992109 ctttccaaacaagttggaacccactacttctaaagctaatgggaggccagcagcatatttaactacacggtttaaaatatagttataactagaatcaa 17992206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 16692271 - 16692098
Alignment:
Q  17 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 116  Q
    ||||||||| | |||||||||||||||  ||||||||| ||   ||||||||| |||||   || || |||||| | |||||||||||| ||   ||| |    
T  16692271 aaaacactcttttcatcttcctccaaactatcaaaacttactttaagtattttgtgaattcgtttaccaggaatccattcatatcgatcaaatgtagatt 16692172  T
Q  117 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataa 190  Q
    ||||||||||||||| ||||||| ||||||| || |||| || ||| || || ||||||||||||| |||||||    
T  16692171 tccattcttctatattctttccaaacaagttagatcctactacttctaaagctaatggaaggccagaagcataa 16692098  T

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Target: scaffold0019 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 57072 - 57264
Alignment:
Q  17 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 116  Q
    |||||| || ||||||||||||||||||||||||| || ||   |||||| | ||| |||| || | | ||||| ||||||||  |||  ||   ||| |    
T  57072 aaaacattcttctcatcttcctccaaagcatcaaagcttactttaagtatctcttggatctttttaatgggaatcctttcatactgatttaatgcagatt 57171  T
Q  117 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaa 209  Q
    |||||||| |||||| ||||||| ||||||| ||||| | || ||| ||||||||||||||||| | ||||||| ||| |||| ||| |||||    
T  57172 tccattctcctatattctttccaaacaagttcgaacccactacttctaaggccaatggaaggcctgaagcataagttactgcaaggtgtaaaa 57264  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 224
Target Start/End: Original strand, 5089772 - 5089935
Alignment:
Q  61 aagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttccatacaagttggaacctaatatt 160  Q
    |||||| ||||| || |||| | ||||||| ||||||||   ||| |  ||||| ||||||| |||||||| ||||||| |||| |||||||| |  | |    
T  5089772 aagtatcttttggatttctttattaggaatcctttcatactcatctagtaaagatttccatttttctatatcctttccaaacaaattggaacccacaact 5089871  T
Q  161 tccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttg 224  Q
    || || |||||||||||||||| ||||||| |||   ||||||||||||| |  ||||||||||    
T  5089872 tctaaagccaatggaaggccagaagcataagttaccacacggtttaaaattccttcataacttg 5089935  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 31906458 - 31906285
Alignment:
Q  17 aaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaat 116  Q
    ||||||||  |||||||||||||||||||||||||||| ||    ||||| ||||| ||||||| | | |||||  ||||||||||||  ||   ||| |    
T  31906458 aaaacacttttctcatcttcctccaaagcatcaaaacttactttgagtatattttggatctctttatttggaatgatttcatatcgatgtaatgcagatt 31906359  T
Q  117 tccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataa 190  Q
     |||||||| ||||| ||||||| | || |||||||| |  | |  ||| ||||||||||| |||| |||||||    
T  31906358 cccattcttgtatattctttccaaataaattggaaccaataactatcaaagccaatggaagtccagaagcataa 31906285  T

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Target: scaffold0038 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 44262 - 44178
Alignment:
Q  116 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcac 200  Q
    ||||||||| ||||||  |||||| | ||||| ||||| | || ||| || |||||||||||||||| ||||||| ||| |||||    
T  44262 ttccattctcctatattatttccaaataagtttgaacccactacttctaaagccaatggaaggccagaagcataagttactgcac 44178  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 26137176 - 26137084
Alignment:
Q  133 ctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataatttattgcacggtttaaaatacactcataacttga 225  Q
    ||||||| ||||| ||||||| | || ||| || || || |||||||||| |||||| || | ||||| |||||||||| | |||||||||||    
T  26137176 ctttccaaacaagctggaacccactacttctaaagctaacggaaggccagaagcatatttaactgcactgtttaaaatataatcataacttga 26137084  T

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