View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6453_high_5 (Length: 501)

Name: NF6453_high_5
Description: NF6453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6453_high_5
NF6453_high_5
[»] chr3 (7 HSPs)
chr3 (7-475)||(42245020-42245488)
chr3 (52-215)||(15962314-15962475)
chr3 (50-175)||(8147530-8147659)
chr3 (50-175)||(20975979-20976108)
chr3 (51-95)||(20962135-20962179)
chr3 (15-45)||(13417952-13417982)
chr3 (115-175)||(20962051-20962112)
[»] chr8 (4 HSPs)
chr8 (7-483)||(14162620-14163099)
chr8 (54-157)||(24482362-24482468)
chr8 (52-215)||(32179349-32179510)
chr8 (284-349)||(14154919-14154983)
[»] chr1 (11 HSPs)
chr1 (7-483)||(13799923-13800402)
chr1 (54-175)||(51110399-51110519)
chr1 (50-129)||(24549315-24549392)
chr1 (48-158)||(951637-951750)
chr1 (52-158)||(19748599-19748708)
chr1 (50-87)||(49086673-49086710)
chr1 (51-175)||(50057562-50057690)
chr1 (284-349)||(13797625-13797688)
chr1 (54-95)||(23600488-23600529)
chr1 (13-45)||(16148928-16148960)
chr1 (13-45)||(23298415-23298447)
[»] chr6 (13 HSPs)
chr6 (51-215)||(32668693-32668857)
chr6 (50-215)||(26895639-26895804)
chr6 (51-175)||(12464208-12464332)
chr6 (52-207)||(13730349-13730504)
chr6 (50-147)||(13553391-13553488)
chr6 (125-175)||(21671834-21671884)
chr6 (125-175)||(21679250-21679300)
chr6 (13-45)||(18627006-18627038)
chr6 (13-45)||(18992814-18992846)
chr6 (13-45)||(25339688-25339720)
chr6 (110-175)||(28044923-28044986)
chr6 (106-163)||(3356999-3357056)
chr6 (13-45)||(17794411-17794443)
[»] chr7 (10 HSPs)
chr7 (56-175)||(21546795-21546914)
chr7 (50-175)||(10260120-10260248)
chr7 (50-175)||(15003324-15003453)
chr7 (107-215)||(9739574-9739676)
chr7 (13-45)||(4257090-4257122)
chr7 (13-45)||(17206875-17206907)
chr7 (109-163)||(9732738-9732792)
chr7 (50-163)||(21383527-21383641)
chr7 (13-45)||(4540787-4540819)
chr7 (15-47)||(21063106-21063138)
[»] chr4 (7 HSPs)
chr4 (50-205)||(13876013-13876167)
chr4 (51-151)||(17871522-17871621)
chr4 (50-172)||(13959025-13959146)
chr4 (54-133)||(19564879-19564958)
chr4 (106-157)||(11289347-11289398)
chr4 (13-46)||(33331531-33331564)
chr4 (51-95)||(13268887-13268931)
[»] chr5 (6 HSPs)
chr5 (51-175)||(15116833-15116956)
chr5 (115-175)||(19663715-19663776)
chr5 (115-175)||(17099629-17099690)
chr5 (107-163)||(23225006-23225062)
chr5 (13-45)||(24143685-24143717)
chr5 (13-45)||(31414220-31414252)
[»] scaffold0259 (1 HSPs)
scaffold0259 (51-174)||(20728-20849)
[»] chr2 (6 HSPs)
chr2 (50-175)||(20378220-20378344)
chr2 (51-159)||(30947375-30947486)
chr2 (13-45)||(20109405-20109437)
chr2 (51-147)||(28645687-28645783)
chr2 (115-175)||(17363644-17363705)
chr2 (13-45)||(19124791-19124823)
[»] scaffold0072 (1 HSPs)
scaffold0072 (54-175)||(18593-18717)
[»] scaffold0205 (2 HSPs)
scaffold0205 (115-175)||(10099-10160)
scaffold0205 (50-87)||(10012-10049)
[»] scaffold0062 (1 HSPs)
scaffold0062 (50-175)||(2069-2197)
[»] scaffold0074 (1 HSPs)
scaffold0074 (13-45)||(54395-54427)
[»] scaffold0123 (1 HSPs)
scaffold0123 (13-45)||(13733-13765)
[»] scaffold0011 (1 HSPs)
scaffold0011 (13-45)||(172313-172345)


Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 7 - 475
Target Start/End: Original strand, 42245020 - 42245488
Alignment:
Q  7 tcgaagaatatatttaaaacactaattattgactcatcacgatccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttgg 106  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42245020 tcgaataatatatttaaaacactaattattgactcatcacaatccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttgg 42245119  T
Q  107 tctactatcttctcacttaatcactaccggtgtaatttctacctacgactctcctagtcctagatatgaaattccctactcaattcctcttactcacaat 206  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42245120 tctactatcttctcacttaatcactaccagtgtaatttctacctacgactctcctagtcctagatatgaaattccctactcaattcctcttactcacaat 42245219  T
Q  207 cacagtgattctctacataaaaacccttgatctactatcatctcacttaagaatatcaatgtatcaattcctcttccttcttaataccacctaataatac 306  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42245220 cacagtgattccctacataaaaacccttgatctactatcatctcacttaagaatatcaatgtatcaattcctcttacttcttaataccacctaataatac 42245319  T
Q  307 acaatatgtgctttataaaaagattttttgtattatcatattactactgcagttacttgaacaaaaaatatattacccctttagtaacattttaagtata 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42245320 acaatatgtgctttataaaaagattttttgtattatcatattactattgcagttacttgaacaaaaaatatattacccctttagtaacattttaagtata 42245419  T
Q  407 agaatgcatggctattttctatcagccagtaaatcaaataattgaggtgaaatttaatacgctgaatta 475  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42245420 agaatgcatggctattttctatcaaccagtaaatcaaataattgaggtgaaatttaatacgctgaatta 42245488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 52 - 215
Target Start/End: Original strand, 15962314 - 15962475
Alignment:
Q  52 aggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactaccggtgtaatttctaccta 151  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||| |||||||||   |||||||||||||||||| ||||||||||||||||    
T  15962314 aggaaggaaattcactatagtagtatcaatttgaagcatacataaaaaccctcggtctactac--tctcacttaatcactacctgtgtaatttctaccta 15962411  T
Q  152 cgactctcctagtcctagatatgaaattccctactcaattcctcttactcacaatcacagtgat 215  Q
     ||||||||||||||||||||||| || || |||||| ||||||||| |||||||| |||||||    
T  15962412 agactctcctagtcctagatatgagatcccttactcacttcctcttaatcacaatcccagtgat 15962475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 8147659 - 8147530
Alignment:
Q  50 ccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttg----gtctactatcttctcacttaatcactaccggtgtaatttc 145  Q
    ||||||||||||||||||||| || ||||||||| ||||||||| | ||| |  |     | |||||| |||||||||||||||||||| ||||||||||    
T  8147659 ccaggaaggaaattcactataataatatcaattcgaagcatacaaaaaaaactatcaccagcctactaacttctcacttaatcactacccgtgtaatttc 8147560  T
Q  146 tacctacgactctcctagtcctagatatga 175  Q
    |||||| |||||||||||||||||||||||    
T  8147559 tacctaagactctcctagtcctagatatga 8147530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 20976108 - 20975979
Alignment:
Q  50 ccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtc----tactatcttctcacttaatcactaccggtgtaatttc 145  Q
    ||||||||||||| ||||| | ||||||||||| |||||||||||| ||| | ||   |    ||||| |||||||||||||||||||| |||  |||||    
T  20976108 ccaggaaggaaatccactacaatagtatcaatttaaagcatacata-aaagctttcaccaacctactaacttctcacttaatcactacccgtggtatttc 20976010  T
Q  146 tacctacgactctc-ctagtcctagatatga 175  Q
    |||||| ||||||| ||||||| | ||||||    
T  20976009 tacctaagactctcactagtccaaaatatga 20975979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 20962179 - 20962135
Alignment:
Q  51 caggaaggaaattcactatagtagtatcaattcaaagcatacata 95  Q
    |||||||||||  |||||||||||||||||||| |||||||||||    
T  20962179 caggaaggaaagccactatagtagtatcaattcgaagcatacata 20962135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 13417982 - 13417952
Alignment:
Q  15 tatatttaaaacactaattattgactcatca 45  Q
    |||||||||||||||||||||||||||||||    
T  13417982 tatatttaaaacactaattattgactcatca 13417952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 20962112 - 20962051
Alignment:
Q  115 cttctcacttaatcactaccggtgtaatttctacctacgactctc-ctagtcctagatatga 175  Q
    |||||||||||||||||||| |||  ||||||||||| ||||||| | ||||||| ||||||    
T  20962112 cttctcacttaatcactacccgtggtatttctacctaagactctcacaagtcctaaatatga 20962051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 7 - 483
Target Start/End: Original strand, 14162620 - 14163099
Alignment:
Q  7 tcgaagaatatatttaaaacactaattattgactcatcacgatccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttgg 106  Q
    ||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14162620 tcgaataatatatttaaaacactaattattgactcatcacaagccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttag 14162719  T
Q  107 tctactatcttctcacttaatcactaccggtgtaatttctacctacgactctcctagtcctagatatgaaattccctactcaattcctcttactcacaat 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14162720 tctactatcttctcacttaatcactaccggtgtaatttctacctacgactctcctagtgctagatatgaaattccctactcaattcctcttactcacaat 14162819  T
Q  207 cacagtgattctctacataaaaacccttgatctactatcatctcacttaagaatatcaatgtatcaattcctcttccttcttaataccacctaataatac 306  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14162820 cacagtgattccctacataaaaacccttggtctactatcatctcacttaagaatatcaatgtatcaattcctcttacttcttaataccacctaataatac 14162919  T
Q  307 acaatatgtgctttataaaaagattttttgtattatcatattactactgcagttacttgaacaaaaaatatattacccc---tttagtaacattttaagt 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  14162920 acaatatgtgctttataaaaagattttttgtattatcatattactattgcagttacttgaacaaaaaatatattacccctaatttagtaacattttaagt 14163019  T
Q  404 ataagaatgcatggctattttctatcagccagtaaatcaaataattgaggtgaaatttaatacgctgaattattttctgg 483  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14163020 ataagaatgcatggctattttctatcaaccagtaaatcaaataattgaggtgaaatttaatacgctgaattattttctgg 14163099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 157
Target Start/End: Original strand, 24482362 - 24482468
Alignment:
Q  54 gaaggaaattcactatagtagtatcaattcaaagcatacatagaaac---ccttggtctactatcttctcacttaatcactaccggtgtaatttctacct 150  Q
    ||||||||||||||||||||||||||||||  |||||||||| ||||   |    |||||||| |||||||||||||||||||  ||| |||||||| ||    
T  24482362 gaaggaaattcactatagtagtatcaattcgcagcatacataaaaactttctccagtctactagcttctcacttaatcactactcgtgcaatttctatct 24482461  T
Q  151 acgactc 157  Q
    | |||||    
T  24482462 aagactc 24482468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 215
Target Start/End: Original strand, 32179349 - 32179510
Alignment:
Q  52 aggaaggaaattcactatagtagtatcaattcaaagcatacatagaaac---ccttggtctactatcttctcacttaatcactaccggtgtaatttctac 148  Q
    |||||| ||||||||||||| ||||| ||||  ||||||||||| ||||   | |  |||||| | |||||||||||||||| ||| ||| ||||||||     
T  32179349 aggaagaaaattcactatagcagtattaatttgaagcatacataaaaactatcttcagtctaccagcttctcacttaatcaccacccgtgcaatttctat 32179448  T
Q  149 ctacgactctcctagtcctagatatgaaattccctactcaattcctcttactcacaatcacagtgat 215  Q
    ||| ||||||     |||||||||||| || ||||||||| || |||| | |||||||| |||||||    
T  32179449 ctaagactct-----tcctagatatgagatcccctactcactttctctcaatcacaatcccagtgat 32179510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 14154983 - 14154919
Alignment:
Q  284 ttcttaataccacctaataatacacaatatgtgctttataaaaagattttttgtattatcatatta 349  Q
    ||||||||| |||||||||||||| ||| |||||||||| ||    ||||||||||||||||||||    
T  14154983 ttcttaatatcacctaataatacataatctgtgctttat-aattttttttttgtattatcatatta 14154919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 7 - 483
Target Start/End: Original strand, 13799923 - 13800402
Alignment:
Q  7 tcgaagaatatatttaaaacactaattattgactcatcacgatccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttgg 106  Q
    ||||| |||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13799923 tcgaataatatatttaaaacactaattattgactcatcacaagtcaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttag 13800022  T
Q  107 tctactatcttctcacttaatcactaccggtgtaatttctacctacgactctcctagtcctagatatgaaattccctactcaattcctcttactcacaat 206  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  13800023 tctactatcttctcacttaatcactaacggtgtaatttctacctacgactctcctagtgctagatatgaaatttcctactcaattcctcttactcacaat 13800122  T
Q  207 cacagtgattctctacataaaaacccttgatctactatcatctcacttaagaatatcaatgtatcaattcctcttccttcttaataccacctaataatac 306  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  13800123 cacagtgattccctacatataaacccttggtctactatcatctcacttaagaatatcaatttatcaattcctcttacttcttaataccacctaataatac 13800222  T
Q  307 acaatatgtgctttataaaaagattttttgtattatcatattactactgcagttacttgaacaaaaaatatattacccc---tttagtaacattttaagt 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  13800223 acaatatgtgctttataaaaagattttttgtattatcatattactattgcagttacttgaacaaaaaatatattacccctaatttagtaacattttaagt 13800322  T
Q  404 ataagaatgcatggctattttctatcagccagtaaatcaaataattgaggtgaaatttaatacgctgaattattttctgg 483  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13800323 ataagaatgcatggctattttctatcaaccagtaaatcaaataattgaggtgaaatttaatacgctgaattattttctgg 13800402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 51110399 - 51110519
Alignment:
Q  54 gaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactaccggtgtaatttctacctacg 153  Q
    |||| |||||||||| ||||||||||||| |||||||||||| ||||||| ||||||| | |||||||||||||||||||| ||| ||||||||||||      
T  51110399 gaagaaaattcacta-agtagtatcaatttaaagcatacataaaaaccctcggtctac-aacttctcacttaatcactacctgtgcaatttctacctaaa 51110496  T
Q  154 actct-cctagtcctagatatga 175  Q
    ||||| |||||||||||||||||    
T  51110497 actctccctagtcctagatatga 51110519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 24549315 - 24549392
Alignment:
Q  50 ccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatca 129  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||  || ||||||| | |||||||||||||||    
T  24549315 ccaggaaggaaattcacta-agtagtatcaattcaaagcatacataaaaattctcggtctac-agcttctcacttaatca 24549392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 158
Target Start/End: Complemental strand, 951750 - 951637
Alignment:
Q  48 atccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttg----gtctactatcttctcacttaatcactaccggtgtaatt 143  Q
    |||||| ||| |||| |||||||| ||||| ||||| ||||||||||| ||| |||||    | |||||| |||||||||||||||||||| |||  |||    
T  951750 atccagaaagaaaatccactatagcagtataaattcgaagcatacata-aaagccttgaccagcctactaacttctcacttaatcactacccgtggtatt 951652  T
Q  144 tctacctacgactct 158  Q
    |||||||| ||||||    
T  951651 tctacctaagactct 951637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 19748708 - 19748599
Alignment:
Q  52 aggaaggaaattcactatagtagtatcaattcaaagcatacatagaaaccctt----ggtctactatcttctcacttaatcactaccggtgtaatttcta 147  Q
    ||||| ||||||||||||| |||||||||||| ||||||||||| ||| | ||     | |||||| |||||||||||||||||| | ||| ||||||||    
T  19748708 aggaatgaaattcactataatagtatcaattcgaagcatacata-aaagctttcaccagcctactaacttctcacttaatcactagccgtgcaatttcta 19748610  T
Q  148 cctacgactct 158  Q
    |||| ||||||    
T  19748609 cctaagactct 19748599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 49086710 - 49086673
Alignment:
Q  50 ccaggaaggaaattcactatagtagtatcaattcaaag 87  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  49086710 ccaggaaagaaattcactatagtagtatcaattcaaag 49086673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 50057562 - 50057690
Alignment:
Q  51 caggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtc----tactatcttctcacttaatcactaccggtgtaatttct 146  Q
    |||||||||||| |||||||||| ||||||||| ||||||||||| ||| | ||   |    ||||| |||||||||||||||||  | ||| ||||| |    
T  50057562 caggaaggaaatccactatagtaatatcaattcgaagcatacata-aaagctttcaccaacctactaacttctcacttaatcactgtccgtggaattttt 50057660  T
Q  147 acctacgactctc-ctagtcctagatatga 175  Q
    ||||| ||||||| ||||||||| ||||||    
T  50057661 acctaagactctcactagtcctaaatatga 50057690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 13797688 - 13797625
Alignment:
Q  284 ttcttaataccacctaataatacacaatatgtgctttataaaaagattttttgtattatcatatta 349  Q
    ||||||||| |||||||||||||| ||| ||||||||||  ||   ||||||||||||||||||||    
T  13797688 ttcttaatatcacctaataatacataatctgtgctttat--aatttttttttgtattatcatatta 13797625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 23600529 - 23600488
Alignment:
Q  54 gaaggaaattcactatagtagtatcaattcaaagcatacata 95  Q
    |||| ||||||||||||||||||||||||| |||||| ||||    
T  23600529 gaagaaaattcactatagtagtatcaattcgaagcatgcata 23600488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 16148928 - 16148960
Alignment:
Q  13 aatatatttaaaacactaattattgactcatca 45  Q
    |||||||| ||||||||||||||||||||||||    
T  16148928 aatatattaaaaacactaattattgactcatca 16148960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 23298447 - 23298415
Alignment:
Q  13 aatatatttaaaacactaattattgactcatca 45  Q
    |||||||| ||||||||||||||||||||||||    
T  23298447 aatatattaaaaacactaattattgactcatca 23298415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 8e-50; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 32668693 - 32668857
Alignment:
Q  51 caggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactaccggtgtaatttctacct 150  Q
    ||||||||||||| ||||| ||||||||||||| ||| ||||||| ||||| | ||||||||| |||||||||||||||||||| |||||||||||||||    
T  32668693 caggaaggaaatttactatggtagtatcaattcgaagaatacataaaaaccatcggtctactagcttctcacttaatcactacccgtgtaatttctacct 32668792  T
Q  151 acgactctcctagtcctagatatgaaattccctactcaattcctcttactcacaatcacagtgat 215  Q
    | ||||||||||||| |||| |||| |||||||||||| ||||||||| |||||||| |||||||    
T  32668793 aagactctcctagtcatagaaatgagattccctactcacttcctcttaatcacaatcccagtgat 32668857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 50 - 215
Target Start/End: Original strand, 26895639 - 26895804
Alignment:
Q  50 ccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactaccggtgtaatttctacc 149  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||  ||| ||||||||||    
T  26895639 ccagaaaggaaattcacaatagtagtatcaattcaaagcatacataataaccctcggtctactatcttctcacttaatcactactcgtgaaatttctacc 26895738  T
Q  150 tacgactctcctagtcctagatatgaaattccctactcaattcctcttactcacaatcacagtgat 215  Q
    || ||||||||||||||||||||| |||| ||||||| | ||||| ||| ||| |||| |||||||    
T  26895739 taagactctcctagtcctagatatcaaatcccctactaacttccttttaatcaaaatcccagtgat 26895804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 12464208 - 12464332
Alignment:
Q  51 caggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactaccggtgtaatttctacct 150  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||| | ||||||||||| |||||||||||||||||||| ||| |||||||||||    
T  12464208 caggaaggaaattcactaaagtagtatcaattcaaaacatacataaaaatctttggtctactagcttctcacttaatcactacccgtgcaatttctacct 12464307  T
Q  151 acgactctcctagtcctagatatga 175  Q
    | ||||||||||||||| |||||||    
T  12464308 atgactctcctagtcctggatatga 12464332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 52 - 207
Target Start/End: Complemental strand, 13730504 - 13730349
Alignment:
Q  52 aggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactaccggtgtaatttctaccta 151  Q
    ||||||||||||||||||||| ||||||| || ||||||||||| |||||    ||||| ||  |||||||||||||| |||| || |||||||||||||    
T  13730504 aggaaggaaattcactatagtggtatcaactcgaagcatacataaaaaccgccagtctaatagattctcacttaatcattacccgtctaatttctaccta 13730405  T
Q  152 cgactctcctagtcctagatatgaaattccctactcaattcctcttactcacaatc 207  Q
     | | ||||||||||||||||||| || ||||||||| || |||||| ||||||||    
T  13730404 aggcactcctagtcctagatatgagatcccctactcactttctcttaatcacaatc 13730349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 13553391 - 13553488
Alignment:
Q  50 ccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactaccggtgtaatttcta 147  Q
    ||||||||||||||||||||| |||||| | ||  ||||||||||| ||||| | ||||||||| ||||  || ||||||||||| ||||||||||||    
T  13553391 ccaggaaggaaattcactataatagtattattttgaagcatacataaaaaccatcggtctactaacttcgtacctaatcactacctgtgtaatttcta 13553488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 21671884 - 21671834
Alignment:
Q  125 aatcactaccggtgtaatttctacctacgactctcctagtcctagatatga 175  Q
    |||||||| | |||||||||||||||| ||||||| |||||||||||||||    
T  21671884 aatcactatccgtgtaatttctacctaagactctcatagtcctagatatga 21671834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 21679300 - 21679250
Alignment:
Q  125 aatcactaccggtgtaatttctacctacgactctcctagtcctagatatga 175  Q
    |||||||| | |||||||||||||||| ||||||| |||||||||||||||    
T  21679300 aatcactatccgtgtaatttctacctaagactctcatagtcctagatatga 21679250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 18627038 - 18627006
Alignment:
Q  13 aatatatttaaaacactaattattgactcatca 45  Q
    |||||||||||||||||||||||||||||||||    
T  18627038 aatatatttaaaacactaattattgactcatca 18627006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 18992846 - 18992814
Alignment:
Q  13 aatatatttaaaacactaattattgactcatca 45  Q
    |||||||||||||||||||||||||||||||||    
T  18992846 aatatatttaaaacactaattattgactcatca 18992814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 25339688 - 25339720
Alignment:
Q  13 aatatatttaaaacactaattattgactcatca 45  Q
    |||||||||||||||||||||||||||||||||    
T  25339688 aatatatttaaaacactaattattgactcatca 25339720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 28044986 - 28044923
Alignment:
Q  110 actatcttctcacttaatcactaccggtgtaatttctacctacgactctcctagtcctagatatga 175  Q
    |||| |||||||||||||||||||| |||  ||||||||||| ||  |||||||||||| ||||||    
T  28044986 actaacttctcacttaatcactacccgtggtatttctacctaaga--ctcctagtcctaaatatga 28044923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 3357056 - 3356999
Alignment:
Q  106 gtctactatcttctcacttaatcactaccggtgtaatttctacctacgactctcctag 163  Q
    |||||||| |||| ||| ||||||||||| |||||||||||| ||| |||||| ||||    
T  3357056 gtctactagcttcgcacctaatcactacccgtgtaatttctatctaagactctactag 3356999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 17794411 - 17794443
Alignment:
Q  13 aatatatttaaaacactaattattgactcatca 45  Q
    |||||||| ||||||||||||||||||||||||    
T  17794411 aatatattaaaaacactaattattgactcatca 17794443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 21546914 - 21546795
Alignment:
Q  56 aggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactaccggtgtaatttctacctacgac 155  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||  || |||||||||||||||| ||| |||||||||||| |||    
T  21546914 aggaaattcactaaagtagtatcaattcaaagcaaacataaaaacccttggtctactagtttgtcacttaatcactacccgtgcaatttctacctatgac 21546815  T
Q  156 tctcctagtcctagatatga 175  Q
    ||||||||||||||||||||    
T  21546814 tctcctagtcctagatatga 21546795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 10260248 - 10260120
Alignment:
Q  50 ccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttg----gtctactatcttctcacttaatcactaccggtgtaatttc 145  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||| ||| | ||     | |||||| |||||||||||||||||||| ||||||||||    
T  10260248 ccaggaaggaaattcactctagtagtatcaatttgaagcatacata-aaagctttcaccagcctactaacttctcacttaatcactacccgtgtaatttc 10260150  T
Q  146 tacctacgactctcctagtcctagatatga 175  Q
    |||||| ||||||||||||| |||||||||    
T  10260149 tacctaagactctcctagtcatagatatga 10260120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 15003453 - 15003324
Alignment:
Q  50 ccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttg---gtctactatcttctcacttaatcactaccggtgtaatttct 146  Q
    ||||||| |||||| ||||||||||||||||||| ||||||||||| || |  |     ||||||||  ||||||||||||||||||| ||| || ||||    
T  15003453 ccaggaatgaaatttactatagtagtatcaattcgaagcatacataaaagctatcaccagtctactaatttctcacttaatcactacccgtgcaacttct 15003354  T
Q  147 acctacgactctc-ctagtcctagatatga 175  Q
    ||||| ||||||| ||||||||||||||||    
T  15003353 acctaagactctcactagtcctagatatga 15003324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 9739676 - 9739574
Alignment:
Q  107 tctactatcttctcacttaatcactaccggtgtaatttctacctacgactctcctagtcctagatatgaaattccctactcaattcctcttactcacaat 206  Q
    ||||||| ||||||||||||||| |||| ||| |||||||| ||| | ||      ||||||||||||| || ||||||||| ||||||||| | |||||    
T  9739676 tctactagcttctcacttaatcattacccgtgcaatttctatctaaggct------gtcctagatatgagatcccctactcacttcctcttaataacaat 9739583  T
Q  207 cacagtgat 215  Q
    | |||||||    
T  9739582 ctcagtgat 9739574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 4257090 - 4257122
Alignment:
Q  13 aatatatttaaaacactaattattgactcatca 45  Q
    |||||||||||||||||||||||||||||||||    
T  4257090 aatatatttaaaacactaattattgactcatca 4257122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 17206875 - 17206907
Alignment:
Q  13 aatatatttaaaacactaattattgactcatca 45  Q
    |||||||||||||||||||||||||||||||||    
T  17206875 aatatatttaaaacactaattattgactcatca 17206907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 9732792 - 9732738
Alignment:
Q  109 tactatcttctcacttaatcactaccggtgtaatttctacctacgactctcctag 163  Q
    ||||| |||||||||||||||||||  ||| |||||||| ||| |||||||||||    
T  9732792 tactagcttctcacttaatcactactcgtgcaatttctatctaagactctcctag 9732738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 21383641 - 21383527
Alignment:
Q  50 ccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttg-gtctactatcttctcacttaatcactaccggtgtaatttctac 148  Q
    |||||||||||||| |||||| |||||| | ||  |||||| |||| | | |||   |||||||| |||| ||| ||||||||||| ||||||||||||     
T  21383641 ccaggaaggaaatttactataatagtattagtttgaagcatgcataaacaacctccagtctactagcttcacacctaatcactacccgtgtaatttctat 21383542  T
Q  149 ctacgactctcctag 163  Q
    ||| ||| |||||||    
T  21383541 ctaagacactcctag 21383527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 4540819 - 4540787
Alignment:
Q  13 aatatatttaaaacactaattattgactcatca 45  Q
    |||||||| ||||||||||||||||||||||||    
T  4540819 aatatattaaaaacactaattattgactcatca 4540787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 21063106 - 21063138
Alignment:
Q  15 tatatttaaaacactaattattgactcatcacg 47  Q
    |||||| ||||||||||||||||||||||||||    
T  21063106 tatattaaaaacactaattattgactcatcacg 21063138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 50 - 205
Target Start/End: Original strand, 13876013 - 13876167
Alignment:
Q  50 ccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactaccggtgtaatttctacc 149  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||||||   || ||||||||||    
T  13876013 ccaggaaggaaattcactatagtagtatcaattcaaagaatacata-aaaccattggtctactagcttctcacttaatcactacttatgcaatttctacc 13876111  T
Q  150 tacgactctcctagtcctagatatgaaattccctactcaattcctcttactcacaa 205  Q
    || ||||| | ||||||||||||||| || ||||||| |  |||||||| ||||||    
T  13876112 taagactcacgtagtcctagatatgagatcccctacttacctcctcttaatcacaa 13876167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 17871621 - 17871522
Alignment:
Q  51 caggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactaccggtgtaatttctacct 150  Q
    |||||||||||||||||| |||||||||||||||||| ||||||| ||| ||| ||||||||| |||||||| ||||||||||| ||| |||||||||||    
T  17871621 caggaaggaaattcacta-agtagtatcaattcaaagtatacataaaaatcctcggtctactagcttctcacctaatcactacctgtgcaatttctacct 17871523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 50 - 172
Target Start/End: Original strand, 13959025 - 13959146
Alignment:
Q  50 ccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactaccggtgtaatttctacc 149  Q
    |||||||||||||||| || ||||||||||| |||||||||||||| ||| | | | |||||   ||||||||||||||||||||  || ||||||||||    
T  13959025 ccaggaaggaaattcatta-agtagtatcaaatcaaagcatacataaaaatcgtcgatctacgg-cttctcacttaatcactacccatgcaatttctacc 13959122  T
Q  150 tacgactct-cctagtcctagata 172  Q
    || |||||| ||||||||||||||    
T  13959123 taagactctccctagtcctagata 13959146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 19564879 - 19564958
Alignment:
Q  54 gaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactac 133  Q
    ||||||||| ||||||| |||||||| ||  |||||| |||| ||||||||||||||||| |||||||| ||||||||||    
T  19564879 gaaggaaatccactataatagtatcagtttgaagcatgcataaaaacccttggtctactagcttctcacctaatcactac 19564958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 11289398 - 11289347
Alignment:
Q  106 gtctactatcttctcacttaatcactaccggtgtaatttctacctacgactc 157  Q
    |||||||| ||||||||||||||||||||  ||||||||||| ||| |||||    
T  11289398 gtctactagcttctcacttaatcactacccatgtaatttctatctaagactc 11289347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 33331531 - 33331564
Alignment:
Q  13 aatatatttaaaacactaattattgactcatcac 46  Q
    |||||||| |||||||||||||||||||||||||    
T  33331531 aatatattaaaaacactaattattgactcatcac 33331564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 13268887 - 13268931
Alignment:
Q  51 caggaaggaaattcactatagtagtatcaattcaaagcatacata 95  Q
    |||||||||||| ||||| |||||||||||||  |||||||||||    
T  13268887 caggaaggaaatccactacagtagtatcaatttgaagcatacata 13268931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 15116833 - 15116956
Alignment:
Q  51 caggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactaccggtgtaatttctacct 150  Q
    |||||||||||||||||| |||| |||||||||||| |||||||| ||||||| ||||||| | |||||||||||||||| ||| ||| |||||||||||    
T  15116833 caggaaggaaattcacta-agtattatcaattcaaatcatacataaaaaccctcggtctacaa-cttctcacttaatcaccacccgtgcaatttctacct 15116930  T
Q  151 acgactct-cctagtcctagatatga 175  Q
    | |||||| |||||||||||||||||    
T  15116931 aagactctccctagtcctagatatga 15116956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 19663715 - 19663776
Alignment:
Q  115 cttctcacttaatcactaccggtgtaatttctacctacgactctc-ctagtcctagatatga 175  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| ||| ||||||||||||    
T  19663715 cttctcacttaatcactacccgtgtaatttctacctaagactctcactattcctagatatga 19663776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 17099690 - 17099629
Alignment:
Q  115 cttctcacttaatcactaccggtgtaatttctacctacgactctc-ctagtcctagatatga 175  Q
    |||||||||||||||| ||| ||| |||||||||||| ||||||| ||||| ||||||||||    
T  17099690 cttctcacttaatcaccacccgtgcaatttctacctaagactctcactagttctagatatga 17099629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 23225006 - 23225062
Alignment:
Q  107 tctactatcttctcacttaatcactaccggtgtaatttctacctacgactctcctag 163  Q
    ||||||| |||  ||| ||||||||||| |||||||||||| ||| |||||||||||    
T  23225006 tctactagctttgcacctaatcactacccgtgtaatttctatctaagactctcctag 23225062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 24143685 - 24143717
Alignment:
Q  13 aatatatttaaaacactaattattgactcatca 45  Q
    ||||||||||||||||| |||||||||||||||    
T  24143685 aatatatttaaaacacttattattgactcatca 24143717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 31414252 - 31414220
Alignment:
Q  13 aatatatttaaaacactaattattgactcatca 45  Q
    ||||||||||||||| |||||||||||||||||    
T  31414252 aatatatttaaaacattaattattgactcatca 31414220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 20849 - 20728
Alignment:
Q  51 caggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactaccggtgtaatttctacct 150  Q
    |||||||||||||||| | |||||||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||| | ||| |||||||| ||    
T  20849 caggaaggaaattcacca-agtagtatcaattcaaagcaaacataaaaacccttggtctactagcttatcacttaatcactatcagtgcaatttcta-ct 20752  T
Q  151 acgactctcctagtcctagatatg 174  Q
    | ||||||| |||| |||||||||    
T  20751 atgactctcgtagttctagatatg 20728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 20378344 - 20378220
Alignment:
Q  50 ccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactaccggtgtaatttctacc 149  Q
    |||||||| |||| ||||| ||||||||||||||||||| |||||| ||||||| | | ||| | |||||||||||||||||||| ||| ||||||||||    
T  20378344 ccaggaagaaaatgcacta-agtagtatcaattcaaagcgtacatacaaaccctcgatttac-agcttctcacttaatcactacccgtgcaatttctacc 20378247  T
Q  150 tacgactctc-ctagtcctagatatga 175  Q
    || ||||||| ||||||||||||||||    
T  20378246 taagactctctctagtcctagatatga 20378220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 159
Target Start/End: Original strand, 30947375 - 30947486
Alignment:
Q  51 caggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttg----gtctactatcttctcacttaatcactaccggtgtaatttct 146  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||||| |||   ||     | |||||| ||||||||||||||||| || |||||||||||    
T  30947375 caggaaggaaattcactatggtaatatcaattcgaagcatacata-aaagttttcaccagcctactaacttctcacttaatcactgcccgtgtaatttct 30947473  T
Q  147 acctacgactctc 159  Q
    ||||| |||||||    
T  30947474 acctaagactctc 30947486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 20109405 - 20109437
Alignment:
Q  13 aatatatttaaaacactaattattgactcatca 45  Q
    |||||||||||||||||||||||||||||||||    
T  20109405 aatatatttaaaacactaattattgactcatca 20109437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 28645783 - 28645687
Alignment:
Q  51 caggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtctactatcttctcacttaatcactaccggtgtaatttcta 147  Q
    ||||||||||| |||||||| |||||| | ||  |||||| |||| ||||  | ||||||||| |||| ||  ||||||||||| ||||||||||||    
T  28645783 caggaaggaaaatcactataatagtattagtttgaagcatgcataaaaacattcggtctactaacttcgcagctaatcactacccgtgtaatttcta 28645687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 17363644 - 17363705
Alignment:
Q  115 cttctcacttaatcactaccggtgtaatttctacctacgactctc-ctagtcctagatatga 175  Q
    |||||||| ||||||||||  || ||||||||||||| ||||||| || |||||||||||||    
T  17363644 cttctcacctaatcactactcgtataatttctacctaagactctcactggtcctagatatga 17363705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 19124791 - 19124823
Alignment:
Q  13 aatatatttaaaacactaattattgactcatca 45  Q
    |||||||| ||||||||||||||||||||||||    
T  19124791 aatatattaaaaacactaattattgactcatca 19124823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 18593 - 18717
Alignment:
Q  54 gaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttggtc----tactatcttctcacttaatcactaccggtgtaatttctacc 149  Q
    ||||||||| |||||||||||||||||||| ||||||||||| ||| | ||   |    ||||| |||||||||||||||||||| |||  |||||||||    
T  18593 gaaggaaatccactatagtagtatcaattcgaagcatacata-aaatctttcaccaacctactaacttctcacttaatcactacccgtggtatttctacc 18691  T
Q  150 tacgactctcctagtcctagatatga 175  Q
    |||||||||| |||||||| ||||||    
T  18692 tacgactctcatagtcctaaatatga 18717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 10099 - 10160
Alignment:
Q  115 cttctcacttaatcactaccggtgtaatttctacctacgactctc-ctagtcctagatatga 175  Q
    |||||||||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||    
T  10099 cttctcacttaatcactacctgtgtaatttctatctaagactctcactagtcctagatatga 10160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 10012 - 10049
Alignment:
Q  50 ccaggaaggaaattcactatagtagtatcaattcaaag 87  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  10012 ccaggaaggaaattcactataatagtatcaattcaaag 10049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 2197 - 2069
Alignment:
Q  50 ccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaacccttg----gtctactatcttctcacttaatcactaccggtgtaatttc 145  Q
    ||||||| ||||| || |||| |||||||||||| ||||||||||| ||| | ||     | |||||| |||||||||||||||||||| |||  |||||    
T  2197 ccaggaaagaaatccattatactagtatcaattcgaagcatacata-aaagctttcaccagcctactaacttctcacttaatcactacctgtggtatttc 2099  T
Q  146 tacctacgactctcctagtcctagatatga 175  Q
    |||||| |||||||||| ||||| ||||||    
T  2098 tacctaagactctcctaatcctaaatatga 2069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 54395 - 54427
Alignment:
Q  13 aatatatttaaaacactaattattgactcatca 45  Q
    |||||||||||||||||||||||||||||||||    
T  54395 aatatatttaaaacactaattattgactcatca 54427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 13765 - 13733
Alignment:
Q  13 aatatatttaaaacactaattattgactcatca 45  Q
    |||||||| ||||||||||||||||||||||||    
T  13765 aatatattaaaaacactaattattgactcatca 13733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 172345 - 172313
Alignment:
Q  13 aatatatttaaaacactaattattgactcatca 45  Q
    |||||||||||||||||||||||||||| ||||    
T  172345 aatatatttaaaacactaattattgacttatca 172313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University