View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453_low_1 (Length: 858)
Name: NF6453_low_1
Description: NF6453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 212 - 593
Target Start/End: Complemental strand, 34366047 - 34365666
Alignment:
| Q |
212 |
atgaagcagtcatggaagtgcattcttataagagcagctgcaagggtgggatcattgtccaaagctctattcactatgttcttaacaactggttcaacaa |
311 |
Q |
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| T |
34366047 |
atgaagcagtcatggaagtgcattcttataagagcagctgcaagggtgggatcattgtccaaagctctattcactatgttcttaacaactggttcaacaa |
34365948 |
T |
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| Q |
312 |
aagggcaactcatcaaatagtagttcatgtttaaccctcccccgaatccgaacccgaattggcatgtaatcacctctattagcataaaaaatgtcatcaa |
411 |
Q |
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| T |
34365947 |
aagggcaactcatcaaatagtagttcatgtttaaccctcccccgaatccgaacccgaattggcatgtaatcacctctattagcataaaaaatgtcatcaa |
34365848 |
T |
|
| Q |
412 |
tttaaccattaccattttcaatgacttcatagatgatgtatacaccatcttcaaacaattaagggtatttattaaggaatataaagtttggtttatgaga |
511 |
Q |
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| T |
34365847 |
tttaaccattaccattttcaatgacttcatagatgatgtatacatcatcttcaaacaattaagggtatttattaaggaatataaagtttggtttatgaga |
34365748 |
T |
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| Q |
512 |
cctaagaacttagaacttgtatatatagtggggaatagttggcaaaatgcaagaaagtggtgagacggtactatatattatg |
593 |
Q |
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| T |
34365747 |
cctaagaacttagaacttgtatatatagtggggaatagttggcaaaatgcaagaaagtggtgagacggtactatatattatg |
34365666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 659 - 842
Target Start/End: Complemental strand, 34365600 - 34365417
Alignment:
| Q |
659 |
gaagtttgagatagtggtgtatactttatctattggccatgcactataaatataatttcttctcgagtcttacctaatcacactagctagtcaataatca |
758 |
Q |
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| T |
34365600 |
gaagtttgagatagtggtgtatactttatctattggccatgcactataaatataatttcttttcgagtcttacctaatcacactagctagtcaataatca |
34365501 |
T |
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| Q |
759 |
atgtgttttgaattaattatagtaaaactgattaaataaatgtttgattgcatgaaagttgacacgtaagaaatttcaccttgg |
842 |
Q |
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| T |
34365500 |
atgtggtttgaattaattatagtaaaactgattaaataaatgtctgattgcatgaaagttgacacgtaagaaatttcaccttgg |
34365417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 5e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 53 - 236
Target Start/End: Complemental strand, 31748000 - 31747816
Alignment:
| Q |
53 |
gaatcagatatactacaataatgtgtatgcatgatagaaaagtgtatagatgatagattcttttcgatttggatttggtgtgttcaagtcgaatgactag |
152 |
Q |
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| T |
31748000 |
gaatcagatatactacaataatgtgtatgcatgatagaaaagtgtatagatgatagattcttttcgatttggatttggtgtgttcaagtcgaatgactag |
31747901 |
T |
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| Q |
153 |
gtcaaacgcgtgattcactgacatgatggaattcgaatcg-nnnnnnnagtattacccgaatgaagcagtcatggaagtgcattc |
236 |
Q |
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| T |
31747900 |
gtcaaacgcgcgattcactgacatgatggaattcgaatcgttttttttagtattacccgaatgaagcagtcatggaagtgcattc |
31747816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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