View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453_low_10 (Length: 294)
Name: NF6453_low_10
Description: NF6453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453_low_10 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 91094 - 90799
Alignment:
| Q |
1 |
ataattagtgtatatataatggtaggaaaagagcaacattgtgaaaaaa------------cttcatttaaaacaagtcagatcaccatatttgactaaa |
88 |
Q |
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| T |
91094 |
ataattagtgtatatataatggtaggaaaagagcaacattgtgaaaaaaattccttaaaaacttcatttaaaacaagtcacatcaccatatttgactaaa |
90995 |
T |
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| Q |
89 |
tatttgatggaatactaaaaccatcatattttaaattagaagaactaatttcatgaaaatagtaaaactgcaattagaaaaccaattttttccacatatt |
188 |
Q |
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|||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
90994 |
tatttgatggaatactaaaaccgtcatattttaaaataggagaactaatttcatgaaaatagtaaaactgcaattagaaaaccaattttttccacatatt |
90895 |
T |
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| Q |
189 |
tcgcatcatgatcgaaactttctttggttgaacgttgagaatgttgttgtgtgtgaaaacacctagtattactggttccagtcaagcccacctatg |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
90894 |
tcgcatcatgatcgaaactttctttggttgaacgttgagaatgttgttgtgtgtgaaaacacctagtattaatggttccaatcaagcccacctatg |
90799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 40875189 - 40875484
Alignment:
| Q |
1 |
ataattagtgtatatataatggtaggaaaagagcaacattgtgaaaaa------------acttcatttaaaacaagtcagatcaccatatttgactaaa |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
40875189 |
ataattagtgtatatataatggtaggaaaagagcaacattgtgaaaaaaattccttaaaaacttcatttaaaacaagtcacatcaccatatttgactaaa |
40875288 |
T |
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| Q |
89 |
tatttgatggaatactaaaaccatcatattttaaattagaagaactaatttcatgaaaatagtaaaactgcaattagaaaaccaattttttccacatatt |
188 |
Q |
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| T |
40875289 |
tatttgatggaatactaaaaccgtcatattttaaaataggagaactaatttcatgaaaatagtaaaactgcaattagaaaaccaattttttccacatatt |
40875388 |
T |
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| Q |
189 |
tcgcatcatgatcgaaactttctttggttgaacgttgagaatgttgttgtgtgtgaaaacacctagtattactggttccagtcaagcccacctatg |
284 |
Q |
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| T |
40875389 |
tcgcatcatgatcgaaactttctttggttgaacgttgagaatgttgttgtgtgtgaaaacacctagtattaatggttccaatcaagcccacctatg |
40875484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 99
Target Start/End: Complemental strand, 44857952 - 44857897
Alignment:
| Q |
46 |
aaaacttcatttaaaacaagtcagatcaccatattt--gactaaatatttgatgga |
99 |
Q |
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| T |
44857952 |
aaaacttcatttaaaacatatcaaatcacaatattttagactaaatatttgatgga |
44857897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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