View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6453_low_14 (Length: 251)

Name: NF6453_low_14
Description: NF6453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6453_low_14
NF6453_low_14
[»] chr6 (16 HSPs)
chr6 (1-241)||(28097432-28097672)
chr6 (26-244)||(28182068-28182286)
chr6 (18-244)||(28227902-28228128)
chr6 (24-244)||(28326428-28326648)
chr6 (24-244)||(28504064-28504284)
chr6 (18-244)||(28235515-28235741)
chr6 (18-244)||(28296746-28296972)
chr6 (18-244)||(28515101-28515327)
chr6 (83-158)||(28243831-28243906)
chr6 (86-244)||(29826936-29827094)
chr6 (18-155)||(28186433-28186570)
chr6 (83-167)||(29523057-29523141)
chr6 (14-157)||(27676622-27676765)
chr6 (71-157)||(26892649-26892735)
chr6 (73-158)||(26862616-26862701)
chr6 (100-227)||(27697674-27697801)
[»] chr2 (2 HSPs)
chr2 (14-244)||(3280609-3280839)
chr2 (13-244)||(17992216-17992447)
[»] scaffold0038 (3 HSPs)
scaffold0038 (18-244)||(28400-28626)
scaffold0038 (18-244)||(35677-35903)
scaffold0038 (83-158)||(43993-44068)
[»] scaffold0019 (1 HSPs)
scaffold0019 (18-173)||(57300-57455)
[»] chr4 (1 HSPs)
chr4 (14-240)||(5089952-5090178)
[»] chr5 (1 HSPs)
chr5 (84-241)||(16691820-16691977)
[»] chr8 (1 HSPs)
chr8 (71-159)||(16441091-16441179)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 28097432 - 28097672
Alignment:
Q  1 caacttgtttagctttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097432 caacttgtttagctttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgc 28097531  T
Q  101 tagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28097532 tagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccatagcttgcagctgcttcaatttattaatg 28097631  T
Q  201 tcgtcgagaatcaatagaaccttcttttgttgtagcctttg 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28097632 tcgtcgagaatcaatagaaccttcttttgttgtagcctttg 28097672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 244
Target Start/End: Complemental strand, 28182286 - 28182068
Alignment:
Q  26 ccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggta 125  Q
    |||||| | ||||||||| ||||||||||  |||||||  | | ||||||||| |  |||||||||||||| | ||||||| | ||  ||||||||||||    
T  28182286 ccacctcaacaattcaagagcttctttctcatttaacttatctatttcatatgctctttcaatcccatgacctactagcaattgttcgtctcgagtggta 28182187  T
Q  126 acaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttct 225  Q
    |  |||||| |||| |||| ||||||||||||| | |||||||||||| | ||||  ||||||| ||  | ||  || || |||||||||||||||||||    
T  28182186 atgatcactttactaccaggaccaaaccaatcaattcctccagccaaaacctgcaattgcttcagttcgtgaacatcatctagaatcaatagaaccttct 28182087  T
Q  226 tttgttgtagcctttgctt 244  Q
    || | || |||||||||||    
T  28182086 ttcggtgaagcctttgctt 28182068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 28228128 - 28227902
Alignment:
Q  18 aaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctc 117  Q
    ||||| |||||||| | ||||||||| ||||| ||||  |||||||  | | ||||||||| |  |||||||||||||||||||||||| | ||| | ||    
T  28228128 aaagcgttccacctcatcaattcaagagcttcgttctcatttaacttatctatttcatatgctctttcaatcccatgacttgctagcaattgtttgtttc 28228029  T
Q  118 gagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatag 217  Q
    |||||||||  |||||| |||| |||| |||||||||||||   |||||||||||| |  |||  ||||| | ||| | ||  || ||||||||||||||    
T  28228028 gagtggtaatgatcactttacttccaggaccaaaccaatcaagtcctccagccaaaacccgcaattgctttagtttgtgaacatcatcgagaatcaatag 28227929  T
Q  218 aaccttcttttgttgtagcctttgctt 244  Q
    ||| |||||| | || |||||||||||    
T  28227928 aactttctttcggtgaagcctttgctt 28227902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 28326648 - 28326428
Alignment:
Q  24 ttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtgg 123  Q
    |||||||| | ||||||||| |||||| ||||  ||||||   |  ||||||||| |  ||||||||| ||||||  |||||| | ||| ||||||||||    
T  28326648 ttccacctcaacaattcaagagcttctctcttaattaacttaggaatttcatatgctctttcaatcccgtgactttttagcaaatgtttgtctcgagtgg 28326549  T
Q  124 taacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaacctt 223  Q
    |||| |||||||||||||||| ||| |||||||||   |||||||||||| | ||||  ||||||| ||  | ||  || ||||||||||| ||||||||    
T  28326548 taacgatcactctactgccaggaccgaaccaatcaagtcctccagccaaaacctgcaattgcttcagttcgtgaacatcatcgagaatcaacagaacctt 28326449  T
Q  224 cttttgttgtagcctttgctt 244  Q
    |||| | || |||||||||||    
T  28326448 ctttcggtgaagcctttgctt 28326428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 28504284 - 28504064
Alignment:
Q  24 ttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtgg 123  Q
    |||||||| | ||||||||| |||||| ||||  ||||||   |  ||||||||| |  ||||||||| ||||||  |||||| | ||| ||||||||||    
T  28504284 ttccacctcaacaattcaagagcttctctcttaattaacttaggaatttcatatgctctttcaatcccgtgactttttagcaaatgtttgtctcgagtgg 28504185  T
Q  124 taacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaacctt 223  Q
    |||| |||||||||||||||| ||| |||||||||   |||||||||||| | ||||  ||||||| ||  | ||  || ||||||||||| ||||||||    
T  28504184 taacgatcactctactgccaggaccgaaccaatcaagtcctccagccaaaacctgcaattgcttcagttcgtgaacatcatcgagaatcaacagaacctt 28504085  T
Q  224 cttttgttgtagcctttgctt 244  Q
    |||| | || |||||||||||    
T  28504084 ctttcggtgaagcctttgctt 28504064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 28235741 - 28235515
Alignment:
Q  18 aaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctc 117  Q
    |||||||||||||| | ||||||||| ||||| ||||  |||||||  | | |||| || |||  |||||||||||||||||||||||| | ||| ||||    
T  28235741 aaagccttccacctcaacaattcaagagcttcgttctcatttaacttatctatttcgtacgttctttcaatcccatgacttgctagcaattgtttgtctc 28235642  T
Q  118 gagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatag 217  Q
    |||||||||  |||||| |||| |||| ||||||||||||| |  |||| |||||| | ||||  ||||| | ||  | ||  || || |||||||| ||    
T  28235641 gagtggtaatgatcactttacttccaggaccaaaccaatcaatttctcccgccaaaacctgcaattgctttagttcgtgaacatcatctagaatcaacag 28235542  T
Q  218 aaccttcttttgttgtagcctttgctt 244  Q
    |||||||||| | || |||||||||||    
T  28235541 aaccttctttcggtgaagcctttgctt 28235515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 28296746 - 28296972
Alignment:
Q  18 aaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctc 117  Q
    ||||| ||||| || | ||||||||| |||||||| |  |||||||  ||| ||||||||| |  ||||||||||||||   ||||||| ||||| |||     
T  28296746 aaagcattccatctcaacaattcaagagcttctttgtcatttaacttatgtatttcatatgctctttcaatcccatgaccatctagcaattttttttctt 28296845  T
Q  118 gagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatag 217  Q
    |||||||||  |||||| |||| |||  |||||||||||||   | |||||||||| ||||||  ||||||| || || ||  || || |||||||| |     
T  28296846 gagtggtaatgatcactttacttccaagaccaaaccaatcaagtcgtccagccaaaacttgcaattgcttcagttcatgaacatcatctagaatcaacaa 28296945  T
Q  218 aaccttcttttgttgtagcctttgctt 244  Q
    |||||||||| | || |||||||||||    
T  28296946 aaccttctttcggtgaagcctttgctt 28296972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 28515327 - 28515101
Alignment:
Q  18 aaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctc 117  Q
    ||||| ||||| || | ||||||||| |||||||| |  |||||||  ||| ||||||||| |  ||||||||||||||   ||||||| ||||| |||     
T  28515327 aaagcattccatctcaacaattcaagagcttctttgtcatttaacttatgtatttcatatgctctttcaatcccatgaccatctagcaattttttttctt 28515228  T
Q  118 gagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatag 217  Q
    |||||||||  |||||| |||| |||  |||||||||||||   | |||||||||| ||||||  ||||||| || || ||  || || |||||||| |     
T  28515227 gagtggtaatgatcactttacttccaagaccaaaccaatcaagtcgtccagccaaaacttgcaattgcttcagttcatgaacatcatctagaatcaacaa 28515128  T
Q  218 aaccttcttttgttgtagcctttgctt 244  Q
    |||||||||| | || |||||||||||    
T  28515127 aaccttctttcggtgaagcctttgctt 28515101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 28243906 - 28243831
Alignment:
Q  83 ttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatca 158  Q
    ||||||||||||||||  |||||| | | | |||||||||||||| ||||||||||| |||| ||| |||||||||    
T  28243906 ttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaatca 28243831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 244
Target Start/End: Complemental strand, 29827094 - 29826936
Alignment:
Q  86 aatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgc 185  Q
    |||||||||||||| |||||| | ||  |||||||||||||  |||||| | ||||||| |||||||||||||   ||||| |||| | ||||||  |||    
T  29827094 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgc 29826995  T
Q  186 ttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgctt 244  Q
     |||  || | || |||||| |||||||| || || |||||| ||  ||||||||||||    
T  29826994 ctcatgttgtcaacgtcgtcaagaatcaaaagtactttctttcgtcctagcctttgctt 29826936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 28186570 - 28186433
Alignment:
Q  18 aaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctc 117  Q
    |||||||||||| | | ||||||||| ||||||||||  |||||||  |||  || ||||| |  |||||||||||||   |||||||| | ||| ||||    
T  28186570 aaagccttccacgtcaacaattcaagagcttctttctcatttaacttatgtaatttatatgctctttcaatcccatgatgagctagcaattgtttgtctc 28186471  T
Q  118 gagtggtaacaatcactctactgccagcaccaaaccaa 155  Q
    |||||||||  |||||  |||| |||| ||||||||||    
T  28186470 gagtggtaatgatcacaatactaccaggaccaaaccaa 28186433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 167
Target Start/End: Complemental strand, 29523141 - 29523057
Alignment:
Q  83 ttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctcca 167  Q
    |||||||||||||  ||||||||| | ||| || | ||| |||||||| ||||| || |||| ||||||||||||||| ||||||    
T  29523141 ttcaatcccatgaaatgctagcaaatgtttgtcgcaagttgtaacaataactctgctaccagaaccaaaccaatcagttcctcca 29523057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 27676622 - 27676765
Alignment:
Q  14 tttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagttttta 113  Q
    |||||||||||||||||| | ||||||||| |||||| |||  || ||||| | |  | ||||||||  ||| ||||||||||   |||| |||| ||||    
T  27676622 tttaaaagccttccacctcaacaattcaagagcttctgtctcattcaactcttctactgcatatgttttttctatcccatgacagtctagtaagtgttta 27676721  T
Q  114 tctcgagtggtaacaatcactctactgccagcaccaaaccaatc 157  Q
    ||||| ||||| |  || ||||| || |||| ||||||||||||    
T  27676722 tctcgggtggtgatgatgactctgcttccaggaccaaaccaatc 27676765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 26892649 - 26892735
Alignment:
Q  71 ttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatc 157  Q
    ||||||||||  ||||||   ||||||||||||||| ||| | |||||||| ||||| ||||||| ||| |||  ||||||||||||    
T  26892649 ttcatatgttttttcaatatgatgacttgctagcaaatttctgtctcgagtagtaacgatcactcgactaccaataccaaaccaatc 26892735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 26862701 - 26862616
Alignment:
Q  73 catatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatca 158  Q
    ||||||||  ||| |||||||| | || ||| |||| |||||||||||||||||  || |||||||| |||  |||||||||||||    
T  26862701 catatgttctttctatcccatggcatgttagtaagtgtttatctcgagtggtaatgatgactctacttccatgaccaaaccaatca 26862616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 227
Target Start/End: Original strand, 27697674 - 27697801
Alignment:
Q  100 ctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatc-agtccctccagccaaagcttgcagctgcttcaatttattaa 198  Q
    |||| |||| ||||||||| ||||| |  || ||||| || |||| |||||||||||| ||||| |||||||||||| || ||||| | || ||| | ||    
T  27697674 ctagtaagtgtttatctcgggtggtgatgatgactctgcttccaggaccaaaccaatcgagtcc-tccagccaaagcctgtagctgatccagtttgtcaa 27697772  T
Q  199 tgtcgtcgagaatcaatagaaccttcttt 227  Q
      |||||||||||||| |||| |||||||    
T  27697773 catcgtcgagaatcaaaagaatcttcttt 27697801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 3280839 - 3280609
Alignment:
Q  14 tttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagttttta 113  Q
    |||||||||||||||  ||||||||||||| ||||||| ||| |||||||| | | |||||||||||| ||||||||||||||||| || ||||| |||     
T  3280839 tttaaaagccttccatgtaagcaattcaagtgcttcttccttatttaactcatctatttcatatgttagttcaatcccatgacttgataacaagtgtttg 3280740  T
Q  114 tctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatca 213  Q
    |||||||||||||  ||||| ||||| ||| ||| ||||||||||  ||||||||| ||  |||||| |||||||||||  |||| ||| || |||| ||    
T  3280739 tctcgagtggtaatgatcaccctactaccaacactaaaccaatcaagccctccagctaagacttgcacctgcttcaattcgttaacgtcatcaagaacca 3280640  T
Q  214 atagaaccttcttttgttgtagcctttgctt 244  Q
    |||||||||| ||  | ||||||||||||||    
T  3280639 atagaacctttttccggtgtagcctttgctt 3280609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 17992216 - 17992447
Alignment:
Q  13 ctttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagttttt 112  Q
    ||||||| ||||||||||| | || |||||| ||||||| ||  |||||  | | |  ||||||| ||  || ||||||||||| || || ||| | |||    
T  17992216 ctttaaatgccttccaccttaacagttcaagagcttcttcctcatttaatccatctacttcatatattgttttaatcccatgacatgttaacaaatgttt 17992315  T
Q  113 atctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatc 212  Q
     |||||||||||||  || ||||| ||||||  ||||| |||| ||| | ||||| ||||| | ||||  ||||| | ||| |  ||||| |||||||||    
T  17992316 gtctcgagtggtaatgatgactctgctgccacgaccaagccaaccaggctctccaaccaaaacctgcaattgctttagtttgtcgatgtcatcgagaatc 17992415  T
Q  213 aatagaaccttcttttgttgtagcctttgctt 244  Q
    || ||||| ||||||||   ||||||||||||    
T  17992416 aagagaactttcttttgacatagcctttgctt 17992447  T

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Target: scaffold0038 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 28626 - 28400
Alignment:
Q  18 aaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctc 117  Q
    ||||| |||||||| | ||||||||| ||||| ||||  |||||||  | | ||||||||| |  |||||||||||||||||||||||| | ||| | ||    
T  28626 aaagcgttccacctcatcaattcaagagcttcgttctcatttaacttatctatttcatatgctctttcaatcccatgacttgctagcaattgtttgtttc 28527  T
Q  118 gagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatag 217  Q
    |||||||||  |||||| |||| |||| |||||||||||||   |||||||||||| |  |||  ||||| | ||| | ||  || ||||||||||||||    
T  28526 gagtggtaatgatcactttacttccaggaccaaaccaatcaagtcctccagccaaaacccgcaattgctttagtttgtgaacatcatcgagaatcaatag 28427  T
Q  218 aaccttcttttgttgtagcctttgctt 244  Q
    ||| |||||| | || |||||||||||    
T  28426 aactttctttcggtgaagcctttgctt 28400  T

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Target: scaffold0038; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 35903 - 35677
Alignment:
Q  18 aaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctc 117  Q
    |||||||||||||| | ||||||||| ||||| ||||  |||||||  | | |||| || |||  |||||||||||||||||||||||| | ||| ||||    
T  35903 aaagccttccacctcaacaattcaagagcttcgttctcatttaacttatctatttcgtacgttctttcaatcccatgacttgctagcaattgtttgtctc 35804  T
Q  118 gagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatag 217  Q
    |||||||||  |||||| |||| |||| ||||||||||||| |  |||| |||||| | ||||  ||||| | ||  | ||  || || |||||||| ||    
T  35803 gagtggtaatgatcactttacttccaggaccaaaccaatcaatttctcccgccaaaacctgcaattgctttagttcgtgaacatcatctagaatcaacag 35704  T
Q  218 aaccttcttttgttgtagcctttgctt 244  Q
    |||||||||| | || |||||||||||    
T  35703 aaccttctttcggtgaagcctttgctt 35677  T

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Target: scaffold0038; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 44068 - 43993
Alignment:
Q  83 ttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatca 158  Q
    ||||||||||||||||  |||||| | | | |||||||||||||| ||||||||||| |||| ||| |||||||||    
T  44068 ttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaatca 43993  T

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Target: scaffold0019 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 57300 - 57455
Alignment:
Q  18 aaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctc 117  Q
    ||||| |||||||| | ||||||||| ||||||||||  |||||||  | | ||||||||| |  |||||||||||||| ||||||||| | ||  ||||    
T  57300 aaagcattccacctcaacaattcaagagcttctttctcatttaacttatctatttcatatgctctttcaatcccatgacctgctagcaattgttcgtctc 57399  T
Q  118 gagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaa 173  Q
    |||||||||  |||||| |||| |||| |||||||||||||   ||||||||||||    
T  57400 gagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaa 57455  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 5089952 - 5090178
Alignment:
Q  14 tttaaaagccttccacctaagcaattcaagggcttctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagttttta 113  Q
    |||||||||||||||||| |  |||| ||| ||||| ||||  |||||  | | |  ||| |||||||  ||||||||||||| |  |||||||| |||     
T  5089952 tttaaaagccttccaccttaataattgaagagcttcgttctcatttaaaccatctacttcgtatgttatatcaatcccatgacattttagcaagtgtttg 5090051  T
Q  114 tctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatca 213  Q
    |||||||||||||  || ||||| ||||||  ||||||||||||||   |||| |||||| | || || || |||| ||| | ||| || ||||||||||    
T  5090052 tctcgagtggtaatgatgactctgctgccaagaccaaaccaatcaggttctccggccaaaacctgtagttgtttcagtttgtcaatatcatcgagaatca 5090151  T
Q  214 atagaaccttcttttgttgtagccttt 240  Q
    | ||||| ||||||  |||||||||||    
T  5090152 aaagaactttctttctttgtagccttt 5090178  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 241
Target Start/End: Complemental strand, 16691977 - 16691820
Alignment:
Q  84 tcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagct 183  Q
    ||||| |||||||||| ||| |||| ||| |||||||||||||  || |||||||| |||| |||||||||||| | | ||||| ||| | ||||||  |    
T  16691977 tcaataccatgacttgttagtaagtgtttgtctcgagtggtaatgatgactctacttccaggaccaaaccaatcgggctctccaaccataacttgcaatt 16691878  T
Q  184 gcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttg 241  Q
    ||||    | || ||  || ||||||||||| |||||||| |||||||||||||||||    
T  16691877 gcttttgctcatcaacatcatcgagaatcaaaagaacctttttttgttgtagcctttg 16691820  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 16441179 - 16441091
Alignment:
Q  71 ttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcag 159  Q
    ||||||||||  ||||| |||||||||||||||||| | ||| || ||||| ||||  || ||||| || |||| |||| |||||||||    
T  16441179 ttcatatgttctttcaaccccatgacttgctagcaactgtttgtcccgagttgtaatgataactctgctaccaggaccataccaatcag 16441091  T

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