View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453_low_16 (Length: 246)
Name: NF6453_low_16
Description: NF6453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 39943842 - 39944082
Alignment:
| Q |
1 |
aaaggagcacagtctgaggatccaaatgctcctctcccacctacactttcattcgatgacaagcgcagaacggagatgttcctcaaagatcaaatcccct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39943842 |
aaaggagcacagtctgaggatccaaatgctcctctcccacctacactttcattcgatgacaagcgcagaacggagatgttcctcaaagatcaaatcccct |
39943941 |
T |
|
| Q |
101 |
cctggtttgctatcgctggctatgtcataattgcaataatatcaatcattaccatcccccacattttccaccagctaaagtggtatcacatcatttgcat |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39943942 |
cctggtttgctatcgcaggctatgtcataattgcaataatctcaatcattaccatcccccacattttccaccagctaaagtggtatcacatcatttgtat |
39944041 |
T |
|
| Q |
201 |
ttacatcattgcacccgcactagccttttgcaatgcctatg |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
39944042 |
ttacatcattgcacccgcactagccttttgcaatgcctatg |
39944082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 28749050 - 28748814
Alignment:
| Q |
5 |
gagcacagtctgaggatccaaatgctcctctcccacctacactttcattcgatgacaagcgcagaacggagatgttcctcaaagatcaaatcccctcctg |
104 |
Q |
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||||||| |||| ||||||||||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
28749050 |
gagcacaacctgatgatccaaatgctcctttcccacctacaatttcattcgacgacaagcgcagaaccgagatgttcctcaaagatcaaatcccctcatg |
28748951 |
T |
|
| Q |
105 |
gtttgctatcgctggctatgtcataattgcaataatatcaatcattaccatcccccacattttccaccagctaaagtggtatcacatcatttgcatttac |
204 |
Q |
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| T |
28748950 |
gttcgcaatcgcaggctatgtcataattgcaataatctcaatcattactatcccacacattttccaccagctaaagtggtattacatcatttgcatttac |
28748851 |
T |
|
| Q |
205 |
atcattgcacccgcactagccttttgcaatgcctatg |
241 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||| |
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| T |
28748850 |
atcattgcacccgcattagccttttgcaatgcctatg |
28748814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 28753063 - 28752827
Alignment:
| Q |
5 |
gagcacagtctgaggatccaaatgctcctctcccacctacactttcattcgatgacaagcgcagaacggagatgttcctcaaagatcaaatcccctcctg |
104 |
Q |
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||||||| |||| ||||||||||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
28753063 |
gagcacaacctgatgatccaaatgctcctttcccacctacaatttcattcgacgacaagcgcagaaccgagatgttcctcaaagatcaaatcccctcatg |
28752964 |
T |
|
| Q |
105 |
gtttgctatcgctggctatgtcataattgcaataatatcaatcattaccatcccccacattttccaccagctaaagtggtatcacatcatttgcatttac |
204 |
Q |
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||| || ||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28752963 |
gttcgcaatcgcaggctatgtcataattgcaataatctcaatcattactatcccacacattttccaccagctaaagtggtattacatcatttgcatttac |
28752864 |
T |
|
| Q |
205 |
atcattgcacccgcactagccttttgcaatgcctatg |
241 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||| |
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| T |
28752863 |
atcattgcacccgcattagccttttgcaatgcctatg |
28752827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28739103 - 28738865
Alignment:
| Q |
1 |
aaaggagcacagtctgaggatccaaatgctcctctcccacctacactttcattcgatgacaagcgcagaacggagatgttcctcaaagatcaaatcccct |
100 |
Q |
| |
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||||||||| ||||| | ||||||||||||||||||| ||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28739103 |
aaaggagcagagtctaatgatccaaatgctcctctccaacctacactttcatttgacgacaagcgcagaaccgagatgttcctcaaagatcaaatcccct |
28739004 |
T |
|
| Q |
101 |
cctggtttgctatcgctggctatgtcataattgcaataatatcaatcattaccatcccccacattttccaccagctaaagtggtatcacatcatttgcat |
200 |
Q |
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|||||||| ||||||| |||||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| |||||||||||||| |||||| || |
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| T |
28739003 |
cctggttttctatcgcaggctatgtcataattggtataatttcaataattaccataccccacatttttcaccagataaagtggtatcacgtcattttgat |
28738904 |
T |
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| Q |
201 |
ttacatcattgcacccgcactagccttttgcaatgccta |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
28738903 |
ttacatcattgcacccgcactagccttttgcaatgccta |
28738865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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