View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6453_low_19 (Length: 241)

Name: NF6453_low_19
Description: NF6453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6453_low_19
NF6453_low_19
[»] scaffold0041 (2 HSPs)
scaffold0041 (18-187)||(91422-91587)
scaffold0041 (205-241)||(91385-91421)
[»] chr7 (2 HSPs)
chr7 (18-187)||(40874695-40874860)
chr7 (205-241)||(40874861-40874897)
[»] chr4 (2 HSPs)
chr4 (96-241)||(2386793-2386934)
chr4 (169-240)||(31331000-31331069)
[»] chr5 (3 HSPs)
chr5 (91-241)||(7402892-7403040)
chr5 (91-240)||(7309641-7309790)
chr5 (209-241)||(15514494-15514526)
[»] chr6 (1 HSPs)
chr6 (153-241)||(24463982-24464068)
[»] scaffold0651 (1 HSPs)
scaffold0651 (169-240)||(914-983)
[»] scaffold0036 (1 HSPs)
scaffold0036 (92-221)||(19046-19172)
[»] chr8 (1 HSPs)
chr8 (153-240)||(32569239-32569324)
[»] chr1 (1 HSPs)
chr1 (202-241)||(8415538-8415577)
[»] chr3 (1 HSPs)
chr3 (173-225)||(40970787-40970837)


Alignment Details
Target: scaffold0041 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 91587 - 91422
Alignment:
Q  18 aagagtcatatcatctgtaattgaacttgtataggtttacaatggaaacaatgaagtgannnnnnnnnnnnnatagttttatctttacaattttcattgc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||    
T  91587 aagagtcatatcatctgtaattgaacttgtataggtttacaatggaaacaatgaagtgatttttttttt----tagttttatctttacaattttcattgc 91492  T
Q  118 taacaatgctctccttttagttgtttgaaataccaaaaatgtcagaataagaaaaaataaatctattaaa 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  91491 taacaatgctctccttttagttgtttgaaataccaaaaatgtcagaataagaaaaaataaatctattaaa 91422  T

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Target: scaffold0041; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 91421 - 91385
Alignment:
Q  205 tgagtattttatttctcttaattttacacaaataaac 241  Q
    |||||||||||||||||||||||||||||||||||||    
T  91421 tgagtattttatttctcttaattttacacaaataaac 91385  T

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Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 40874695 - 40874860
Alignment:
Q  18 aagagtcatatcatctgtaattgaacttgtataggtttacaatggaaacaatgaagtgannnnnnnnnnnnnatagttttatctttacaattttcattgc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||    
T  40874695 aagagtcatatcatctgtaattgaacttgtataggtttacaatggaaacaatgaagtgatttttttttt----tagttttatctttacaattttcattgc 40874790  T
Q  118 taacaatgctctccttttagttgtttgaaataccaaaaatgtcagaataagaaaaaataaatctattaaa 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40874791 taacaatgctctccttttagttgtttgaaataccaaaaatgtcagaataagaaaaaataaatctattaaa 40874860  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 40874861 - 40874897
Alignment:
Q  205 tgagtattttatttctcttaattttacacaaataaac 241  Q
    |||||||||||||||||||||||||||||||||||||    
T  40874861 tgagtattttatttctcttaattttacacaaataaac 40874897  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 241
Target Start/End: Complemental strand, 2386934 - 2386793
Alignment:
Q  96 ttatctttacaattttcattgctaacaatgctctccttttagttgtttgaaataccaaaaatgtcagaataagaaaaaataaatctattaaacaaagtgg 195  Q
    ||||||||||||||||||||||||| | |  | || ||||||||| || | ||| ||||||||||| ||||||| ||||||||||| |||||| ||||||    
T  2386934 ttatctttacaattttcattgctaatattattatctttttagttgcttaagatatcaaaaatgtcaaaataagacaaaataaatcttttaaac-aagtgg 2386836  T
Q  196 taatctttttgagtattttatttctcttaattttacacaaataaac 241  Q
    |||||   |||| ||||||||||||||| ||||| |||||||||||    
T  2386835 taatc---ttgaatattttatttctcttgattttgcacaaataaac 2386793  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 31331069 - 31331000
Alignment:
Q  169 aaaaaataaatctattaaacaaagtggtaatctttttgagtattttatttctcttaattttacacaaataaa 240  Q
    ||||| ||||||| |||||||| ||||||||||||| || ||||||||||||||| ||||||||||||||||    
T  31331069 aaaaattaaatcttttaaacaa-gtggtaatctttt-gattattttatttctcttgattttacacaaataaa 31331000  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 241
Target Start/End: Original strand, 7402892 - 7403040
Alignment:
Q  91 tagttttatctttacaattttcattgctaacaatgctctccttttagttgtttgaaataccaaaaatgtcagaataagaaaaaataaatctattaaacaa 190  Q
    ||||||||  || ||||||||||||||||| | || | || ||||| ||| || | ||| ||||||||| | ||||||| |||||||||||||||||| |    
T  7402892 tagttttactttcacaattttcattgctaaaagtgttttctttttaattggttaagatatcaaaaatgttaaaataagacaaaataaatctattaaac-a 7402990  T
Q  191 agtggtaatctttttgagtattttatttctcttaattttacacaaataaac 241  Q
    |||||||||| |||| | ||||||||||||||||||||  |||||||||||    
T  7402991 agtggtaatc-ttttaaatattttatttctcttaatttcgcacaaataaac 7403040  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 240
Target Start/End: Complemental strand, 7309790 - 7309641
Alignment:
Q  91 tagttttatctttacaattttcattgctaacaatgctctccttttagttgttt--gaaataccaaaaatgtcagaataagaaaaaataaatctattaaac 188  Q
    ||||||||||||||| |||||||||| ||| |||  |||| ||||||||| ||  || ||  ||||||||||| |||||||  |||||||||| ||||||    
T  7309790 tagttttatctttacgattttcattgttaataatattctctttttagttgcttaagatatttcaaaaatgtcaaaataagaccaaataaatcttttaaac 7309691  T
Q  189 aaagtggtaatctttttgagtattttatttctcttaattttacacaaataaa 240  Q
     ||||| ||||| |||||||||||||||||||||| | |||  |||||||||    
T  7309690 -aagtgataatc-ttttgagtattttatttctcttgactttgtacaaataaa 7309641  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 15514494 - 15514526
Alignment:
Q  209 tattttatttctcttaattttacacaaataaac 241  Q
    ||||||||||||||||||||| |||||||||||    
T  15514494 tattttatttctcttaattttgcacaaataaac 15514526  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 24464068 - 24463982
Alignment:
Q  153 aaaatgtcagaataagaaaaaataaatctattaaacaaagtggtaatctttttgagtattttatttctcttaattttacacaaataaac 241  Q
    |||| |||| ||||| | ||||||||||| ||||||||| || ||||||||| |||||||||||||||||||| |||||||||| ||||    
T  24464068 aaaacgtcaaaataaaacaaaataaatctcttaaacaaa-tgataatctttt-gagtattttatttctcttaactttacacaaacaaac 24463982  T

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Target: scaffold0651 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 983 - 914
Alignment:
Q  169 aaaaaataaatctattaaacaaagtggtaatctttttgagtattttatttctcttaattttacacaaataaa 240  Q
    ||||| ||||||| |||||||| ||||||||||||| || ||||||||||||||| ||||||||||||||||    
T  983 aaaaattaaatcttttaaacaa-gtggtaatctttt-gattattttatttctcttgattttacacaaataaa 914  T

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Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 221
Target Start/End: Original strand, 19046 - 19172
Alignment:
Q  92 agttttatctttacaattttcattgctaacaatgctctccttttagttgtttgaaataccaaaaatgtcagaataagaaaaaataaatctattaaacaaa 191  Q
    |||||||||| |||||||||||||| ||| |||  |||| ||||| ||| ||   ||| | | |||||||  |||||| ||||||||||| |||||| ||    
T  19046 agttttatctatacaattttcattgttaataatattctctttttaattgcttatgatatcgagaatgtcaacataagacaaaataaatct-ttaaac-aa 19143  T
Q  192 gtggtaatctttttgagtattttatttctc 221  Q
    ||||||||| ||||||||| ||||||||||    
T  19144 gtggtaatc-ttttgagtagtttatttctc 19172  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 240
Target Start/End: Original strand, 32569239 - 32569324
Alignment:
Q  153 aaaatgtcagaataagaaaaaataaatctattaaacaaagtggtaatctttttgagtattttatttctcttaattttacacaaataaa 240  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||||| ||| ||   ||||||||||||| || ||| | ||||||||    
T  32569239 aaaatgtcaaaataagataaaataaatctattaaacaaa-tggtaat-tttatgcacattttatttctctaaactttgcgcaaataaa 32569324  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 8415538 - 8415577
Alignment:
Q  202 ttttgagtattttatttctcttaattttacacaaataaac 241  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  8415538 ttttgagtattttatttctcttaactttgcacaaataaac 8415577  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 40970837 - 40970787
Alignment:
Q  173 aataaatctattaaacaaagtggtaatctttttgagtattttatttctcttaa 225  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||| ||||||    
T  40970837 aataaatctattaaacaaa-tgataatctttt-gagtattttatttttcttaa 40970787  T

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