View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453_low_21 (Length: 240)
Name: NF6453_low_21
Description: NF6453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453_low_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 39943366 - 39943587
Alignment:
| Q |
19 |
ggtgtcatgtggcctctcattggtgctaaaaaaggagattggttccctgcggatctcaaagaaagcagcttacatggtcttcaaggttacagggtatgtt |
118 |
Q |
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| T |
39943366 |
ggtgtcatgtggcctctcattggtgctaaaaaaggagattggttccctgccgatctcaaagaaagcagcttacatggtcttcaaggttacagggtatgtt |
39943465 |
T |
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| Q |
119 |
gtctttctacatttcaattttttctttatttaaattgtaggcgaaaatctactattttgacaaatactccacttttgtaagtatattttgaaattgatat |
218 |
Q |
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| T |
39943466 |
gtctttctacatttcaattttttatttatttaaattgtaggcgaaaatctactattttgacaaatactccacttttgtaagtataatttgaaattgatat |
39943565 |
T |
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| Q |
219 |
ggaaaaatagtagtttctcatt |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
39943566 |
ggaaaaatagtagtttctcatt |
39943587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 28739580 - 28739365
Alignment:
| Q |
21 |
tgtcatgtggcctctcattggtgctaaaaaaggagattggttccctgcggatctcaaagaaagcagcttacatggtcttcaaggttacagggtatgttgt |
120 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||| || ||||| |||| |||||||||||||||||||||||||| ||| ||||| |
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| T |
28739580 |
tgtcatgtggcctctcattggttctaaaaaaggagattggttctctgctgagctcaatgaaaacagcttacatggtcttcaaggttacaaagtaagttgt |
28739481 |
T |
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| Q |
121 |
ctttctacatttcaattttttctttatttaaattgtaggcgaaaatctactattttgacaaatactccacttttgtaagtatattttgaaattgatatgg |
220 |
Q |
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| T |
28739480 |
ctttctgtatttctattttttatttatttaaattgttggcaaaaatctacatttttgatacatactccatttttgtaagtatattttgaaattgatatgg |
28739381 |
T |
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| Q |
221 |
aaaaatagtagtttct |
236 |
Q |
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| T |
28739380 |
aaaaatagtagtttct |
28739365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 28749522 - 28749304
Alignment:
| Q |
21 |
tgtcatgtggcctctcattggtgctaaaaaaggagattggttccctgcggatctcaaagaaagcagcttacatggtcttcaaggttacagggtatg-ttg |
119 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||||| ||| | ||| |
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| T |
28749522 |
tgtcatgtggcctctcattggttctaaaaaaggagattggttcccttctgatctcaaacatagcagcttacatggtcttcaaggttacaaagtaagtttg |
28749423 |
T |
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| Q |
120 |
tctttctacatttcaattttttctttatttaaattgtaggcgaaaatctactattttgacaaatactccac-ttttgtaagtatattttgaaattgatat |
218 |
Q |
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||||||| ||||| ||||| | ||||||||| ||||||||||||| |||| ||||||| |||||||||| ||||||||||||| |||| ||||| ||| |
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| T |
28749422 |
tctttcttgatttcgattttctatttatttaacttgtaggcgaaaacctacatttttgac-aatactccactttttgtaagtatactttggaattggtat |
28749324 |
T |
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| Q |
219 |
ggaaaaatagtagtttctca |
238 |
Q |
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| T |
28749323 |
agaaaaatagtagtttctca |
28749304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 28753535 - 28753317
Alignment:
| Q |
21 |
tgtcatgtggcctctcattggtgctaaaaaaggagattggttccctgcggatctcaaagaaagcagcttacatggtcttcaaggttacagggtatg-ttg |
119 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||||| ||| | ||| |
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| T |
28753535 |
tgtcatgtggcctctcattggttctaaaaaaggagattggttcccttctgatctcaaacatagcagcttacatggtcttcaaggttacaaagtaagtttg |
28753436 |
T |
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| Q |
120 |
tctttctacatttcaattttttctttatttaaattgtaggcgaaaatctactattttgacaaatactccac-ttttgtaagtatattttgaaattgatat |
218 |
Q |
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| T |
28753435 |
tctttcttgatttcgattttctatttatttaacttgtaggcgaaaacctacatttttgac-aatactccactttttgtaagtatactttggaattggtat |
28753337 |
T |
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| Q |
219 |
ggaaaaatagtagtttctca |
238 |
Q |
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||||||||||||||||||| |
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| T |
28753336 |
agaaaaatagtagtttctca |
28753317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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