View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6453_low_3 (Length: 634)
Name: NF6453_low_3
Description: NF6453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 19 - 621
Target Start/End: Complemental strand, 12813817 - 12813220
Alignment:
| Q |
19 |
cactatatatgacctttgtcaaaattttcttagaagaaggagtgagagggttaatatttcatgacattgatccnnnnnnntattttatgtttagaagata |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12813817 |
cactatatatgacctttgtcaaaattttcttagaagaaggagtgagagggttaatatttcatgacattgatccaaaaaaatattttatgtttagaagata |
12813718 |
T |
|
| Q |
119 |
gggttaaaatggaatgtnnnnnnntatatatgtggcggcagtcaattgtgtatttgttggatcgtggtgtgtttcgtgggtggcttactggtgatggcct |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12813717 |
gggttaaaatggaatgtaaaaaaatatatatgtggcgg---tcaattgtgtatttgttggatcgtggtgtgtttcgtgggtggcttactggtgatggcct |
12813621 |
T |
|
| Q |
219 |
acaagaagagttgaggaagttggctcttcaggaggttattggaatgtatgatcattctcttactggtgttagaaaaccacttttgcaatcatctgtcaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12813620 |
acaagaagagttgaggaagttggctcttcaggaggttattggaatgtatgatcattctcttactggtgttagaaaaccacttttgcaatcatctgtcaaa |
12813521 |
T |
|
| Q |
319 |
ccctcaaacgaaactaatcaccaatcttactcttcctctttcnnnnnnnnncaattcaaacaatgatagagatgatttatgggtttcaaagaaagagata |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12813520 |
ccctcaaacgaaactaatcaccaatcttactcttcctctttc--tttgtttcaattcaaacagtgatagagatgatttatgggtttcaaagaaagagata |
12813423 |
T |
|
| Q |
419 |
atgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatcttttgaagctattcattttcttcaatccttctctaat |
518 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12813422 |
atgatatttgaaacttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatcttttgaagctattcattttcttcaattcttctctaat |
12813323 |
T |
|
| Q |
519 |
ttgaagacctaataatgtttaaatgcatatggttattaattttgaagaggcacataggatgatttttattttgaagggttgatgaactatgaagatgatg |
618 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12813322 |
ttgaagacctagtaatgtttaaatgcatatggttcttaattttgaagaggcacataggatgacttttattttgaagggttgatgaactatgaagatgatg |
12813223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 376 - 625
Target Start/End: Complemental strand, 22418305 - 22418056
Alignment:
| Q |
376 |
aaacaatgatagagatgatttatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacat |
475 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22418305 |
aaacaatgatagagatgatatatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacat |
22418206 |
T |
|
| Q |
476 |
tgtatcttttgaagctattcattttcttcaatccttctctaatttgaagacctaataatgtttaaatgcatatggttattaattttgaagaggcacatag |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22418205 |
tgtatcttttgaagctattcattttcttcaatcctactctaatttgaagacctagtaatgtttaaatgcatatggttcttaattttgaagaggcacatag |
22418106 |
T |
|
| Q |
576 |
gatgatttttattttgaagggttgatgaactatgaagatgatgatgatgt |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22418105 |
gatgatttttattttgaagggttgatgaactatgaagatgatgatgatgt |
22418056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 22418378 - 22418304
Alignment:
| Q |
162 |
aattgtgtatttgttggatcgtggtgtgtttcgtgggtggcttactggtgatggcctacaagaagagttgaggaa |
236 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22418378 |
aattgcgtatttgttggatcgtggtgtgtttcgtgggtggcttactagtgatggcctacaagaagagttgaggaa |
22418304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 162 - 279
Target Start/End: Complemental strand, 30622111 - 30621994
Alignment:
| Q |
162 |
aattgtgtatttgttggatcgtggtgtgtttcgtgggtggcttactggtgatggcctacaagaagagttgaggaagttggctcttcaggaggttattgga |
261 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30622111 |
aattgcgtatttgttggatcgtggtgtttttcgtgggtggcttactggtgatggcccacaagaggagttgaggaagttggctcttcacgaggttattgga |
30622012 |
T |
|
| Q |
262 |
atgtatgatcattctctt |
279 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
30622011 |
atgtacgatcattctctt |
30621994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 370 - 471
Target Start/End: Complemental strand, 14998449 - 14998348
Alignment:
| Q |
370 |
caattcaaacaatgatagagatgatttatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaag |
469 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||| || ||| || ||||| |||| ||||| |
|
|
| T |
14998449 |
caattcaaacagtgataaagatgatttctgggtttgaaagaaagagataatgatattttaagcttttcaattttgtagatacatgagaaagatttgaaag |
14998350 |
T |
|
| Q |
470 |
aa |
471 |
Q |
| |
|
|| |
|
|
| T |
14998349 |
aa |
14998348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 570 - 620
Target Start/End: Complemental strand, 14998326 - 14998276
Alignment:
| Q |
570 |
acataggatgatttttattttgaagggttgatgaactatgaagatgatgat |
620 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
14998326 |
acataagatgatttttattttgaagggtttatgaattatgaagatgatgat |
14998276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 352
Target Start/End: Original strand, 48292638 - 48292701
Alignment:
| Q |
289 |
agaaaaccacttttgcaatcatctgtcaaaccctcaaacgaaactaatcaccaatcttactctt |
352 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||| |||||||||||| ||| |||||| |
|
|
| T |
48292638 |
agaaagccacttttgctctcatctgtcaaaccctcaaacgtaactaatcaccattctcactctt |
48292701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University