View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6453_low_4 (Length: 522)
Name: NF6453_low_4
Description: NF6453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 232 - 507
Target Start/End: Complemental strand, 7370662 - 7370387
Alignment:
| Q |
232 |
tttgaaactaccggagatgagatgcaaattgtggagggtaaactaaagtgtcaagttctggaggatagagtgaagtgtctccaaagttttcttcggagtt |
331 |
Q |
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| T |
7370662 |
tttgaaactaccggagatgagatgcaaattgtggagggtaaactaaagtgtcaagttctggaggatagagtgaagtgtctccaaagttttcttcggagtt |
7370563 |
T |
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| Q |
332 |
atctcaagctagcaacatcttcatcctttcattaatggnnnnnnnnnnnncttctcttttgaaatgttgcaacttctagtttattttatcaacatcttat |
431 |
Q |
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| T |
7370562 |
atctcaagctagcaacatcttcatcctttcattgatcgttttttgtttttcttctcttttgaaatgttgcaacttctagtttattttatcaacatcttat |
7370463 |
T |
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| Q |
432 |
atggtttcttctttttagcttcaatttcaaatgaatgaagagtcaaaattattgatagctttgtgatcttgatatt |
507 |
Q |
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| T |
7370462 |
atgatttcttctttttagcttcaatttcaaatgaatgaagagtcaaaattattgatagctttgagatcttgatatt |
7370387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 385 - 474
Target Start/End: Complemental strand, 7322863 - 7322775
Alignment:
| Q |
385 |
ctcttttgaaatgttgcaacttctagtttattttatcaacatcttatatggtttcttctttttagcttcaatttcaaatgaatgaagagt |
474 |
Q |
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| T |
7322863 |
ctcttttgaaatgttggaacttctagtttacttgattatcgtcttgtatggttgcttcttttt-gcttcaatttaaaatgaatgaagagt |
7322775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 388 - 470
Target Start/End: Complemental strand, 7291285 - 7291202
Alignment:
| Q |
388 |
ttttgaaatgttgcaacttctagtttattttat--caacatcttatatggtttcttctttttagcttcaatttcaaatgaatgaa |
470 |
Q |
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| T |
7291285 |
ttttgaaatgttgcaacttctggtttatttgattatatcatcttatatgatcgcttcttttta-cttcaatttaaaatgaatgaa |
7291202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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