View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6453_low_8 (Length: 342)
Name: NF6453_low_8
Description: NF6453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6453_low_8 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 13217556 - 13217883
Alignment:
| Q |
1 |
caagatatgttttctgataccgctatacaattacaacctgtctttgctcaatggatacaaaatacccacgctttagcacctggtacaacggcccctggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13217556 |
caagatatgttttctgataccgctatacaattacaaccagtctttgctcaatggatacaaaatacccacgctttagcacctggtacaacggcccctggtg |
13217655 |
T |
|
| Q |
101 |
caacagcaagcaccagtttgacttggggcggtggtgatttagtggcagtgggcggcaaagtagctttgttacctattccattaggaactgcagatttttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13217656 |
caacagcaagcaccagtttgacttggggcggtggtgatttagtggcagtgggcggcaaagtagctttgttacctattccattaggaactgcagatttttt |
13217755 |
T |
|
| Q |
201 |
ggtacatcatattcatgcatttacaattcacgtgacggtattgatactcctaaaaggagttctatttgctcgtagctcacgattgataccggataaagca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13217756 |
ggtacatcatattcatgcatttacaattcacgtgacggtattgatactcctaaaaggagttctatttgctcgtagctcacgattgataccggataaagca |
13217855 |
T |
|
| Q |
301 |
aatcttggttttcggttcccttgtgatg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
13217856 |
aatcttggttttcggttcccttgtgatg |
13217883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 18176538 - 18176214
Alignment:
| Q |
1 |
caagatatgttttctgataccgctatacaattacaacctgtctttgctcaatggatacaaaatacccacgctttagcacctggtacaacggcccctggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18176538 |
caagatatgttttctgataccgctatacaattacaaccagtctttgctcaatggatacaaaatacccacgctttagcacctggtacaacggcccctggtg |
18176439 |
T |
|
| Q |
101 |
caacagcaagcaccagtttgacttggggcggtggtgatttagtggcagtgggcggcaaagtagctttgttacctattccattaggaactgcagatttttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18176438 |
caacagcaagcaccagtttgacttggggcggtggtgatttagtggcagtgggcggcaaagtagctttgttacctattccattaggaactgcagatttttt |
18176339 |
T |
|
| Q |
201 |
ggtacatcatattcatgcatttacaattcacgtgacggtattgatactcctaaaaggagttctatttgctcgtagctcacgattgataccggataaagca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18176338 |
ggtacatcatattcatgcatttacaattcacgtgacggtattgatactcctaaaaggagttctatttgctcgtagctcacgattgataccggataaagca |
18176239 |
T |
|
| Q |
301 |
aatcttggttttcggttcccttgtg |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
18176238 |
aatcttggttttcggttcccttgtg |
18176214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 18044814 - 18044608
Alignment:
| Q |
1 |
caagatatgttttctgataccgctatacaattacaacctgtctttgctcaatggatacaaaatacccacgctttagcacctggtacaacggcccctggtg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18044814 |
caagatatgttttctgatactgctatacaattacaatcagtctttgctcaatggataaaaaatacccacgctttagcacctggtacaacggcccctggtg |
18044715 |
T |
|
| Q |
101 |
caacagcaagcaccagtttgacttggggcggtggtgatttagtggcagtgggcggcaaagtagctttgttacctattccattaggaactgcagatttttt |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18044714 |
caacaacaagcaccagtttgacttggggcggtggtgatttagtggcagtgggcggcaaagtagctttgttacctattccattaggaactgcagatttttt |
18044615 |
T |
|
| Q |
201 |
ggtacat |
207 |
Q |
| |
|
||||||| |
|
|
| T |
18044614 |
ggtacat |
18044608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 222 - 327
Target Start/End: Complemental strand, 18045182 - 18045077
Alignment:
| Q |
222 |
tacaattcacgtgacggtattgatactcctaaaaggagttctatttgctcgtagctcacgattgataccggataaagcaaatcttggttttcggttccct |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18045182 |
tacaattcacgtgacggtattgatactcctaaaagaagttctatttgctcgtagctcacgattgataccggataaagcaaatcttggttttcggttccct |
18045083 |
T |
|
| Q |
322 |
tgtgat |
327 |
Q |
| |
|
|||||| |
|
|
| T |
18045082 |
tgtgat |
18045077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 8286600 - 8286746
Alignment:
| Q |
3 |
agatatgttttctgataccgctatacaattacaacctgtctttgctcaatggatacaaaatacccacgctttagcacctggtacaacggcccctggtgca |
102 |
Q |
| |
|
||||||||||||||||| || | ||||||||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8286600 |
agatatgttttctgataacgttgtacaattacaatttgtctttgttcaatggatacaaaataactacgctttagcacctggtacaacggcccctggtgca |
8286699 |
T |
|
| Q |
103 |
acagcaagcaccagtttgacttggggcggtggtgatttagtggcagtggg |
152 |
Q |
| |
|
||| ||||||| ||||| |||||| ||||||||||| ||||||||||| |
|
|
| T |
8286700 |
acaacaagcactagtttaacttgg---ggtggtgattttgtggcagtggg |
8286746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 168 - 325
Target Start/End: Original strand, 293600 - 293757
Alignment:
| Q |
168 |
gttacctattccattaggaactgcagattttttggtacatcatattcatgcatttacaattcacgtgacggtattgatactcctaaaaggagttctattt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
293600 |
gttacctattccattaggaactgcagattttttggtacatcatattcatgcatttacaattcacgtgacggtattgatactcctaaaaggagttctattt |
293699 |
T |
|
| Q |
268 |
gctcgtagctcacgattgataccggataaagcaaatcttggttttcggttcccttgtg |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
293700 |
gctcgtagctcacgattgataccggataaagcaaatcttggttttcggttcccttgtg |
293757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 240153 - 239826
Alignment:
| Q |
1 |
caagatatgttttctgataccgctatacaattacaacctgtctttgctcaatggatacaaaatacccacgctttagcacctggtacaacggcccctggtg |
100 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||| |||||||||||||| ||||||||| ||| ||| || ||||| ||| || ||||||| |
|
|
| T |
240153 |
caagatatgttttcggataccgccatacaattacaacctatctttgctcaatgggtacaaaatatccatgctactgcgcctggcgtaacagctcctggtg |
240054 |
T |
|
| Q |
101 |
caacagcaagcaccagtttgacttggggcggtggtgatttagtggcagtgggcggcaaagtagctttgttacctattccattaggaactgcagatttttt |
200 |
Q |
| |
|
||||| |||| || || || || ||||| || || || ||||| ||||| || |||||||| ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
240053 |
caacaacaagtactagcttaacgtggggaggcggcgagttagtagcagtaggtggcaaagtggctttgttaccgattccattaggaaccgcagatttttt |
239954 |
T |
|
| Q |
201 |
ggtacatcatattcatgcatttacaattcacgtgacggtattgatactcctaaaaggagttctatttgctcgtagctcacgattgataccggataaagca |
300 |
Q |
| |
|
|| ||||| |||||||||||||| || || ||||| ||||| ||||| | ||||| ||| |||||||||| || || || |||||||| ||||||||| |
|
|
| T |
239953 |
agtccatcacattcatgcatttaccatacatgtgactgtattaatacttttgaaaggtgttttatttgctcggagttcccgtttgatacccgataaagca |
239854 |
T |
|
| Q |
301 |
aatcttggttttcggttcccttgtgatg |
328 |
Q |
| |
|
||||| |||||||| || ||||| |||| |
|
|
| T |
239853 |
aatctaggttttcgctttccttgcgatg |
239826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 14033628 - 14033722
Alignment:
| Q |
233 |
tgacggtattgatactcctaaaaggagttctatttgctcgtagctcacgattgataccggataaagcaaatcttggttttcggttcccttgtgatg |
328 |
Q |
| |
|
||||||||||||||||||| ||| | |||||||||| | ||||||||| ||||||| | ||||| ||||||| ||||| |||| |||||||||| |
|
|
| T |
14033628 |
tgacggtattgatactcct-aaatgtgttctatttgattgtagctcacaattgataaagaataaactaaatcttagtttttggttaccttgtgatg |
14033722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 14029521 - 14029585
Alignment:
| Q |
165 |
tttgttacctattccattaggaactgcagattttttggtacatcatattcatgcatttacaattc |
229 |
Q |
| |
|
||||||| ||||||||||| ||| | || ||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
14029521 |
tttgttaactattccattacgaaatacaactttcttggtacaccatattcatacatttacaattc |
14029585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University