View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6454_high_1 (Length: 269)
Name: NF6454_high_1
Description: NF6454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6454_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 49547555 - 49547306
Alignment:
| Q |
1 |
tgaacaacaataatatctcttaacggtagtgtccaacgtccatcaccaacaaaatatctctttatccttttaattttccaatggtttctgctctgtgcct |
100 |
Q |
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| T |
49547555 |
tgaactacaataatatctcttaacggtagtgtccaacgtccattaccaacaaaatatctctttatccttttaattttccaatggtttctgctctgtgcct |
49547456 |
T |
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| Q |
101 |
aaccccttcatgtcttggtactaaaattttctgtgttcaaacttttgaatgttcaggtctgaacataacaagccatacaaatacgaaccgaaaacatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49547455 |
aaccccttcatgtcttggtactaaaattttctgtgttcaaacttctgaatgttcaggtctgaacataacaagccatacaaatacgaaccgaaaacatttc |
49547356 |
T |
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| Q |
201 |
agggtcaattatgggttccaaggccctcccacagagaagtattgccttgt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49547355 |
agggtcaattatgggttccaaggccctcccacagagaagtattgccttgt |
49547306 |
T |
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