View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6454_high_5 (Length: 226)
Name: NF6454_high_5
Description: NF6454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6454_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 3038792 - 3038982
Alignment:
| Q |
20 |
ctaacggcctctattgcccttatagcagaaggacccgaattcactcctttnnnnnnncaacagtgtaatacacattaattgatcaggaatataaatttga |
119 |
Q |
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| T |
3038792 |
ctaacggcctctattgcccttatagcagaaggacccgaattcactcctttaaaaaaacaacagcgtaatacacattaattgatctgggatataaatttga |
3038891 |
T |
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| Q |
120 |
gataagtcaattcacattacacactcaccaaatcatcttcaaataatattttttaacattaaattaagagtgtggacaatgtatatctgtg |
210 |
Q |
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|||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3038892 |
gataagtcgattcacattacacactcaccaaatcatcttaaagtaatattttttaacattaaattaagagtgtggacaatgtatatctgtg |
3038982 |
T |
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