View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6454_low_2 (Length: 251)
Name: NF6454_low_2
Description: NF6454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6454_low_2 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 61 - 251
Target Start/End: Complemental strand, 31395595 - 31395406
Alignment:
| Q |
61 |
caaggttacaatcatgctacggtgaacaaatgtttcattaaataaattactaggaaaaccctgagatataaatacttgatgaaggaataaagagtggagt |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31395595 |
caaggttacaatcatgctacggtgaacaaatgtttcattaaataaattactaggaaaaccctgagatataaaaccttgatgaaggaataaagagtggagt |
31395496 |
T |
|
| Q |
161 |
gtataattaaaataaaacaaagctagctaacctattgtctaaaacaaaactcaaactgtttcatcttcacttagatcatgtgtggttggca |
251 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31395495 |
gta-aattaaaataaaacaaagctagctaacctattgtctaaaacaaaactcaaactgtttcatcttcacttagatcatgtgtcgttggca |
31395406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University