View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6455_high_2 (Length: 330)
Name: NF6455_high_2
Description: NF6455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6455_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 32950821 - 32950493
Alignment:
| Q |
1 |
ccaaaagctgagagctgaagaaagaatgaggatcggtgaagagatagatttcgctgaagttcaaaatcttgaagataaaaggaggaaagctaacatcgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32950821 |
ccaaaagctgagagctgaagaaagaatgaggatcggtgaagagatagatttcgctgaagttcaaaatcttgaagataaaaggaggaaagctaacatcgaa |
32950722 |
T |
|
| Q |
101 |
attctaaagctgagagacagaaagcggaaagctaaagacagaatgcagaaagctgaagaccgaaggcagaaagctaagataactgaagttcgaaagcagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| |
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| T |
32950721 |
attctaaagctgagagacagaaagcggaaagctaaagacagaatgcagaaagctgaagaccgaaagcagaaagctaagataa-tgaagttcgaaagaagc |
32950623 |
T |
|
| Q |
201 |
cagccacccaggatcactaaggcagcttaagtgtaaaagcagttggaggcttaagatgaagaaaatccatgtggtttatgttttg----------gtctt |
290 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32950622 |
cagccacccaggatcgctaaggcagcttaagtttaaaagcagttggaggcttaagatgaagaaaatccatgtggtttatgttttggccctttatagtctt |
32950523 |
T |
|
| Q |
291 |
ttatttagatattgatttaactgctctctg |
320 |
Q |
| |
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||||||| |||||||||||||||||||||| |
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| T |
32950522 |
ttatttaaatattgatttaactgctctctg |
32950493 |
T |
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