View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6455_low_6 (Length: 222)

Name: NF6455_low_6
Description: NF6455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6455_low_6
NF6455_low_6
[»] chr5 (6 HSPs)
chr5 (1-204)||(9400159-9400362)
chr5 (3-191)||(20073934-20074122)
chr5 (40-146)||(31039403-31039509)
chr5 (40-146)||(31052893-31052999)
chr5 (40-75)||(31071796-31071831)
chr5 (4-36)||(5893927-5893959)
[»] chr4 (8 HSPs)
chr4 (1-195)||(9000059-9000253)
chr4 (3-195)||(8914376-8914568)
chr4 (1-204)||(8929289-8929492)
chr4 (3-191)||(8900475-8900663)
chr4 (13-204)||(8979369-8979560)
chr4 (1-191)||(8966153-8966343)
chr4 (1-195)||(9030871-9031065)
chr4 (1-204)||(8955021-8955224)
[»] scaffold0287 (1 HSPs)
scaffold0287 (40-78)||(15856-15894)
[»] chr7 (1 HSPs)
chr7 (40-78)||(3630191-3630229)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 9400362 - 9400159
Alignment:
Q  1 tatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccagaagagttttatccagagagattcttagaaagttctataaattttcttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9400362 tatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccagaagagttttatccagagagattcttagaaagttctataaattttcttg 9400263  T
Q  101 gacaagactttgaatttattccctttggatctggacgaagaatttgtccaggcatttctatggcagttgcatcattggaacttatccttgccaatatcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9400262 gacaagactttgaatttattccctttggatctggacgaagaatttgtccaggcatttctatggcagttgcatcattggaacttatccttgccaatatcct 9400163  T
Q  201 ctat 204  Q
    ||||    
T  9400162 ctat 9400159  T

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Target: chr5; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 3 - 191
Target Start/End: Complemental strand, 20074122 - 20073934
Alignment:
Q  3 tgtgaatgcttgggctattcatagagactctaatgtttggaaagatccagaagagttttatccagagagattcttagaaagttctataaattttcttgga 102  Q
    ||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |||||||| |||||||| ||||||||||| ||||||||||  |||    
T  20074122 tgtgaatgcttgggctattcatacagaccctaatgtttggaaaaatccagaagaattttatcctgagagatttttagaaagttcgataaattttcacgga 20074023  T
Q  103 caagactttgaatttattccctttggatctggacgaagaatttgtccaggcatttctatggcagttgcatcattggaacttatccttgc 191  Q
    ||||| |||||| | |||||||||||| | || || |||||||||||||| || |||||||||||||||||| | ||||||||||||||    
T  20074022 caagattttgaactaattccctttggagccggtcgtagaatttgtccaggtatgtctatggcagttgcatcactcgaacttatccttgc 20073934  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 31039509 - 31039403
Alignment:
Q  40 tggaaagatccagaagagttttatccagagagattcttagaaagttctataaattttcttggacaagactttgaatttattccctttggatctggacgaa 139  Q
    ||||| |||||||||||||||||||||||||||||| ||| ||||  |||| ||||    |||||||| |||||  | ||||| ||||| ||||| ||||    
T  31039509 tggaaggatccagaagagttttatccagagagattcataggaagtgatatagatttaaaaggacaagattttgagctgattccgtttggttctgggcgaa 31039410  T
Q  140 gaatttg 146  Q
    |||||||    
T  31039409 gaatttg 31039403  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 31052999 - 31052893
Alignment:
Q  40 tggaaagatccagaagagttttatccagagagattcttagaaagttctataaattttcttggacaagactttgaatttattccctttggatctggacgaa 139  Q
    ||||| |||||||||||||||||||||||||||||| ||| ||||  |||| ||||    |||||||| |||||  | ||||| ||||| ||||| ||||    
T  31052999 tggaaggatccagaagagttttatccagagagattcataggaagtgatatagatttaaaaggacaagattttgagctgattccgtttggttctgggcgaa 31052900  T
Q  140 gaatttg 146  Q
    |||||||    
T  31052899 gaatttg 31052893  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 31071831 - 31071796
Alignment:
Q  40 tggaaagatccagaagagttttatccagagagattc 75  Q
    ||||| ||||||||||||||||||||||||||||||    
T  31071831 tggaaggatccagaagagttttatccagagagattc 31071796  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 5893927 - 5893959
Alignment:
Q  4 gtgaatgcttgggctattcatagagactctaat 36  Q
    ||||||||||||||||||||||||||| |||||    
T  5893927 gtgaatgcttgggctattcatagagaccctaat 5893959  T

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Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 9000253 - 9000059
Alignment:
Q  1 tatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccagaagagttttatccagagagattcttagaaagttctataaattttcttg 100  Q
    ||||||||||||||||||||||| |||||| |||||||||||||| |||||||||| |||||||| || |||||||||||||||||||||||||||  ||    
T  9000253 tatgtgaatgcttgggctattcagagagaccctaatgtttggaaaaatccagaagaattttatcctgaaagattcttagaaagttctataaattttaatg 9000154  T
Q  101 gacaagactttgaatttattccctttggatctggacgaagaatttgtccaggcatttctatggcagttgcatcattggaacttatccttgccaat 195  Q
    ||||||| |||||| | || ||||||||| |||| || |||||||| ||||| ||  ||||||||||||| ||||||||||||||||||||||||    
T  9000153 gacaagattttgaactaataccctttggagctggtcgtagaatttgcccaggtatgcctatggcagttgcctcattggaacttatccttgccaat 9000059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 8914568 - 8914376
Alignment:
Q  3 tgtgaatgcttgggctattcatagagactctaatgtttggaaagatccagaagagttttatccagagagattcttagaaagttctataaattttcttgga 102  Q
    ||||||||||||||||||||||| |||||| |||||||||||| | |||||||| ||||||||||||||||| |||||||||||| ||||||||| ||||    
T  8914568 tgtgaatgcttgggctattcatacagactcaaatgtttggaaaaacccagaagaattttatccagagagatttttagaaagttctttaaattttcatgga 8914469  T
Q  103 caagactttgaatttattccctttggatctggacgaagaatttgtccaggcatttctatggcagttgcatcattggaacttatccttgccaat 195  Q
    ||||| |||||| | ||||| |||||| | || || |||||||||||||| || |||||||||||||||||| | |||||||||||| |||||    
T  8914468 caagattttgaactaattccttttggagccggtcgtagaatttgtccaggtatgtctatggcagttgcatcactcgaacttatcctttccaat 8914376  T

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Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 8929492 - 8929289
Alignment:
Q  1 tatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccagaagagttttatccagagagattcttagaaagttctataaattttcttg 100  Q
    ||||||||||||||| ||||||||||||||||| |  ||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||    
T  8929492 tatgtgaatgcttggtctattcatagagactctgaaatttggaaagatccggaagagttttatcctgagagattcttagagagttctataaattttcttg 8929393  T
Q  101 gacaagactttgaatttattccctttggatctggacgaagaatttgtccaggcatttctatggcagttgcatcattggaacttatccttgccaatatcct 200  Q
    |||| || |||||||| ||||| |||||| | || || |||||||| ||||| |||||| | ||||||||||| |||||||||| |||||| ||| | ||    
T  8929392 gacatgattttgaattaattccgtttggagcaggccgtagaatttgcccaggtatttctgttgcagttgcatcgttggaacttacccttgctaatcttct 8929293  T
Q  201 ctat 204  Q
    ||||    
T  8929292 ctat 8929289  T

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Target: chr4; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 191
Target Start/End: Complemental strand, 8900663 - 8900475
Alignment:
Q  3 tgtgaatgcttgggctattcatagagactctaatgtttggaaagatccagaagagttttatccagagagattcttagaaagttctataaattttcttgga 102  Q
    ||||||||||||||||||||||| |||| |  ||||||||||| | ||||||||||||||||| || ||||| |||||||||||||||||||||  ||||    
T  8900663 tgtgaatgcttgggctattcatacagacccagatgtttggaaaaacccagaagagttttatcctgaaagatttttagaaagttctataaatttttatgga 8900564  T
Q  103 caagactttgaatttattccctttggatctggacgaagaatttgtccaggcatttctatggcagttgcatcattggaacttatccttgc 191  Q
    ||||| |||||| | |||||||||||| | || || |||||||| ||||| || |||||||||||||||||||||||| ||||||||||    
T  8900563 caagattttgaactaattccctttggagccggtcgtagaatttgcccaggtatgtctatggcagttgcatcattggaagttatccttgc 8900475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 8979369 - 8979560
Alignment:
Q  13 tgggctattcatagagactctaatgtttggaaagatccagaagagttttatccagagagattcttagaaagttctataaattttcttggacaagactttg 112  Q
    ||||||||||| |||||  |||||  ||||||| |||||||||| |||||||| ||||||||| |||||||||||||||||||| ||||||| || || |    
T  8979369 tgggctattcaaagagatcctaatacttggaaaaatccagaagaattttatcccgagagattcatagaaagttctataaattttattggacatgatttcg 8979468  T
Q  113 aatttattccctttggatctggacgaagaatttgtccaggcatttctatggcagttgcatcattggaacttatccttgccaatatcctctat 204  Q
    || | || ||||||||| |||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| | ||||||    
T  8979469 aactaataccctttggagctggtcgtagaatttgtcctggcatgtctatggcagttgcatcattggaacttatccttgctaatcttctctat 8979560  T

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Target: chr4; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 8966343 - 8966153
Alignment:
Q  1 tatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccagaagagttttatccagagagattcttagaaagttctataaattttcttg 100  Q
    ||||||||||||||||||||||| |||||| | | |  ||||||| ||||||||||||||||||| ||||||||||| ||| |||| |  ||||||||||    
T  8966343 tatgtgaatgcttgggctattcaaagagacccaagtaattggaaaaatccagaagagttttatcccgagagattcttggaatgttcgacgaattttcttg 8966244  T
Q  101 gacaagactttgaatttattccctttggatctggacgaagaatttgtccaggcatttctatggcagttgcatcattggaacttatccttgc 191  Q
    ||||||| |||||||||||||| |||||| | || || |||||||||||||| || ||||||| |||||||||| | ||||| ||||||||    
T  8966243 gacaagattttgaatttattccgtttggagcaggtcgtagaatttgtccaggtatatctatgggagttgcatcagtagaactgatccttgc 8966153  T

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Target: chr4; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 9030871 - 9031065
Alignment:
Q  1 tatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccagaagagttttatccagagagattcttagaaagttctataaattttcttg 100  Q
    ||||||||||||||||||||||| ||||||  |||||||||| || |  ||||||| |||||||| || |||||||||||||||||||||||||||  ||    
T  9030871 tatgtgaatgcttgggctattcagagagaccataatgtttgggaaaacgcagaagaattttatcctgaaagattcttagaaagttctataaattttactg 9030970  T
Q  101 gacaagactttgaatttattccctttggatctggacgaagaatttgtccaggcatttctatggcagttgcatcattggaacttatccttgccaat 195  Q
    ||||||| |||||| | || ||||||||| |||| || |||||||| || ||| |  | ||||||||||| |||||| |||||||||||||||||    
T  9030971 gacaagattttgaactaataccctttggagctggccgtagaatttgccccggcttacccatggcagttgcctcattgaaacttatccttgccaat 9031065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 8955021 - 8955224
Alignment:
Q  1 tatgtgaatgcttgggctattcatagagactctaatgtttggaaagatccagaagagttttatccagagagattcttagaaagttctataaattttcttg 100  Q
    ||||| ||||||||||||||||| |||||  |  || |||||| | | |||||||| |||||||| |||||||||||||||||||||||||||||| |||    
T  8955021 tatgtaaatgcttgggctattcagagagatccagatatttggataaacccagaagaattttatcctgagagattcttagaaagttctataaattttattg 8955120  T
Q  101 gacaagactttgaatttattccctttggatctggacgaagaatttgtccaggcatttctatggcagttgcatcattggaacttatccttgccaatatcct 200  Q
    |||||||||||||| | || ||||||||| |||| || |||||||| || || ||  |||||||| | || || ||||||||||||||||| ||| | ||    
T  8955121 gacaagactttgaactaataccctttggagctggtcgtagaatttgccccggtatacctatggcaatcgcctcgttggaacttatccttgcaaatcttct 8955220  T
Q  201 ctat 204  Q
    ||||    
T  8955221 ctat 8955224  T

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Target: scaffold0287 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 15856 - 15894
Alignment:
Q  40 tggaaagatccagaagagttttatccagagagattctta 78  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  15856 tggaaagatcccgacgagttttatccagagagattctta 15894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 3630229 - 3630191
Alignment:
Q  40 tggaaagatccagaagagttttatccagagagattctta 78  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  3630229 tggaaagatcccgacgagttttatccagagagattctta 3630191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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