View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6455_low_7 (Length: 218)
Name: NF6455_low_7
Description: NF6455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6455_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 8966240 - 8966430
Alignment:
| Q |
11 |
tgtccaagaaaattcgtcgaacattccaagaatctctcaggataaaactcttctggatttttccaattatttaggtctctctgaatagcccaagcattca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||| |
|
|
| T |
8966240 |
tgtccaagaaaattcgtcgaacattccaagaatctctcgggataaaactcttctggatttttccaattacttgggtctctttgaatagcccaagcattca |
8966339 |
T |
|
| Q |
111 |
catacactattgtgttggctggaatcttgtaaccacttataacgcatttttctcttgattctcttggaacaagtagtggggtaggtaggtg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8966340 |
catacactattgtgttggctggaatcttgtaaccacttataatgcacttttctcttgattctcttggaacaagtagtggggtaggtaggtg |
8966430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 9000168 - 9000340
Alignment:
| Q |
29 |
gaacattccaagaatctctcaggataaaactcttctggatttttccaattatttaggtctctctgaatagcccaagcattcacatacactattgtgttgg |
128 |
Q |
| |
|
|||| ||| |||||||| ||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
9000168 |
gaactttctaagaatctttcaggataaaattcttctggatttttccaaacattagggtctctctgaatagcccaagcattcacatacaatattgtcttgg |
9000267 |
T |
|
| Q |
129 |
ctggaatcttgtaaccacttataacgcatttttctcttgattctcttggaacaagtagtggggtaggtaggtg |
201 |
Q |
| |
|
||||||| ||||| ||||||||| ||| ||||| | |||||||||| | | |||||| |||| |||||||| |
|
|
| T |
9000268 |
ctggaatattgtatccacttatagtgcaattttcacgtgattctctttgcataagtagaggggctggtaggtg |
9000340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 8979461 - 8979282
Alignment:
| Q |
10 |
atgtccaagaaaattcgtcgaacattccaagaatctctcaggataaaactcttctggatttttccaattatttaggtctctctgaatagcccaagcattc |
109 |
Q |
| |
|
|||||||| |||||| | |||| ||| | ||||||||| |||||||| |||||||||||||||||| |||| | ||||| ||||||||||| | || |
|
|
| T |
8979461 |
atgtccaataaaatttatagaactttctatgaatctctcgggataaaattcttctggatttttccaagtattaggatctctttgaatagcccagacgttt |
8979362 |
T |
|
| Q |
110 |
acatacactattgtgttggctggaatcttgtaaccacttataacgcatttttctcttgattctcttggaacaagtagtgg |
189 |
Q |
| |
|
||||||| |||||| | ||||||||| ||||| ||| | |||| |||| |||| |||||||||||||| ||||| ||||| |
|
|
| T |
8979361 |
acatacaatattgtttgggctggaatattgtagccattgataatgcatgtttcccttgattctcttggtacaagcagtgg |
8979282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 8955124 - 8954934
Alignment:
| Q |
11 |
tgtccaagaaaattcgtcgaacattccaagaatctctcaggataaaactcttctggatttttccaattatttaggtctctctgaatagcccaagcattca |
110 |
Q |
| |
|
||||||| |||||| | |||| ||| |||||||||||||||||||| |||||||| ||| ||||| ||| | | ||||||||||||||||||||||| | |
|
|
| T |
8955124 |
tgtccaataaaatttatagaactttctaagaatctctcaggataaaattcttctgggtttatccaaatatctggatctctctgaatagcccaagcattta |
8955025 |
T |
|
| Q |
111 |
catacactattgtgttggctggaatcttgtaaccacttataacgcatttttctcttgattctcttggaacaagtagtggggtaggtaggtg |
201 |
Q |
| |
|
|||| | |||||| || || ||||| ||||| |||||||| || ||||| | ||||| ||||| ||||||||||||| |||||||| |
|
|
| T |
8955024 |
catataatattgtctttgcaggaatgttgtatccacttatggtacaattttcaatagattcccttggcacaagtagtggggctggtaggtg |
8954934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 29 - 174
Target Start/End: Complemental strand, 9030956 - 9030811
Alignment:
| Q |
29 |
gaacattccaagaatctctcaggataaaactcttctggatttttccaattatttaggtctctctgaatagcccaagcattcacatacactattgtgttgg |
128 |
Q |
| |
|
|||| ||| |||||||| ||||||||||| ||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
9030956 |
gaactttctaagaatctttcaggataaaattcttctgcgttttcccaaacattatggtctctctgaatagcccaagcattcacatacaatattgtcctgg |
9030857 |
T |
|
| Q |
129 |
ctggaatcttgtaaccacttataacgcatttttctcttgattctct |
174 |
Q |
| |
|
||||||| ||||| ||| ||||| ||| ||||| | ||||||||| |
|
|
| T |
9030856 |
ctggaatattgtatccatttatagtgcaattttcacgtgattctct |
9030811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 177
Target Start/End: Original strand, 8929388 - 8929555
Alignment:
| Q |
10 |
atgtccaagaaaattcgtcgaacattccaagaatctctcaggataaaactcttctggatttttccaattatttag-gtctctctgaatagcccaagcatt |
108 |
Q |
| |
|
||||||||||||||| | |||| || |||||||||||||||||||||||||| |||| ||||||| | || || |||||| ||||||| ||||||||| |
|
|
| T |
8929388 |
atgtccaagaaaatttatagaactctctaagaatctctcaggataaaactcttccggatctttccaaat-ttcagagtctctatgaatagaccaagcatt |
8929486 |
T |
|
| Q |
109 |
cacatacactattgtgttggctggaatcttgtaaccacttataacgcatttttctcttgattctcttgg |
177 |
Q |
| |
|
|||||| |||||||| || || ||||| | ||| |||| || || ||| ||||| |||| ||||||||| |
|
|
| T |
8929487 |
cacatatactattgtttttgcaggaatatggtagccacctacaatgcacttttcccttgtttctcttgg |
8929555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 183
Target Start/End: Original strand, 8900592 - 8900734
Alignment:
| Q |
41 |
aatctctcaggataaaactcttctggatttttccaattatttaggtctctctgaatagcccaagcattcacatacactattgtgttggctggaatcttgt |
140 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||| || | ||||| | ||||||||||||||||||||| |||| || | || || ||||| | || |
|
|
| T |
8900592 |
aatctttcaggataaaactcttctgggtttttccaaacatctgggtctgtatgaatagcccaagcattcacaaacacaatcgcctttgcaggaatttggt |
8900691 |
T |
|
| Q |
141 |
aaccacttataacgcatttttctcttgattctcttggaacaag |
183 |
Q |
| |
|
| |||||||||| ||| ||||| |||| ||||||||| ||||| |
|
|
| T |
8900692 |
agccacttataatgcacttttcccttgtttctcttggcacaag |
8900734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 8914497 - 8914576
Alignment:
| Q |
41 |
aatctctcaggataaaactcttctggatttttccaattatttaggtctctctgaatagcccaagcattcacatacactat |
120 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||| |||| |||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
8914497 |
aatctctctggataaaattcttctgggtttttccaaacatttgagtctgtatgaatagcccaagcattcacaaacactat |
8914576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 9400259 - 9400399
Alignment:
| Q |
11 |
tgtccaagaaaattcgtcgaacattccaagaatctctcaggataaaactcttctggatttttccaattatttaggtctctctgaatagcccaagcattca |
110 |
Q |
| |
|
|||||||||||||| | |||| ||| ||||||||||| ||||||||||||||||||| ||||||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
9400259 |
tgtccaagaaaatttatagaactttctaagaatctctctggataaaactcttctggatctttccaaacattagagtctctatgaatagcccaagcattca |
9400358 |
T |
|
| Q |
111 |
catacactattgtgttggctggaatcttgtaaccacttata |
151 |
Q |
| |
|
||||||||||||| || |||||||||| |||||||| |||| |
|
|
| T |
9400359 |
catacactattgtctttgctggaatctggtaaccacctata |
9400399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 20074028 - 20074129
Alignment:
| Q |
18 |
gaaaattcgtcgaacattccaagaatctctcaggataaaactcttctggatttttccaattatttaggtctctctgaatagcccaagcattcacatacac |
117 |
Q |
| |
|
||||||| |||||| ||| || ||||||||||||||||| |||||||||||||||||| ||| ||||| | ||||||||||||||||||||| |||| |
|
|
| T |
20074028 |
gaaaatttatcgaactttctaaaaatctctcaggataaaattcttctggatttttccaaacattagggtctgtatgaatagcccaagcattcacaaacac |
20074127 |
T |
|
| Q |
118 |
ta |
119 |
Q |
| |
|
|| |
|
|
| T |
20074128 |
ta |
20074129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University