View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6456_low_3 (Length: 321)
Name: NF6456_low_3
Description: NF6456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6456_low_3 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: scaffold0268 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 23204 - 22889
Alignment:
| Q |
1 |
tttcacaaccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccgttcatcccaaccaacgcgcaaggaagcgcgtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || |
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| T |
23204 |
tttcacaaccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccattcatcccaaccaacgcgcaaggaagtgcttt |
23105 |
T |
|
| Q |
101 |
gcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttctttcgtagaagtgagtataacaaacaagca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23104 |
gcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttcttttgtagaagtgagtataacaaacaagca |
23005 |
T |
|
| Q |
201 |
aaatcacagtgtagaccttcatcgcgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgcgttttttcaaccagaaaatcgcgcagaagc |
300 |
Q |
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||||||||||| |||||||| || ||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
23004 |
aaatcacagtgcagaccttcgtcacgtgaaataagctcgtttgagaatgttaaccctggcattaaaccgcgctttttcaaccagaaaatcgcgcaaaagc |
22905 |
T |
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| Q |
301 |
ttccagagaagaaaat |
316 |
Q |
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|||| ||||||||||| |
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| T |
22904 |
ttccggagaagaaaat |
22889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 10196884 - 10197199
Alignment:
| Q |
1 |
tttcacaaccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccgttcatcccaaccaacgcgcaaggaagcgcgtt |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || | |
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| T |
10196884 |
tttcacaaccaagatcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccattcatcccaaccaacgcgcaaggaagagcata |
10196983 |
T |
|
| Q |
101 |
gcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttctttcgtagaagtgagtataacaaacaagca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10196984 |
gcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttctttagtagaagtgagtataacaaacaagca |
10197083 |
T |
|
| Q |
201 |
aaatcacagtgtagaccttcatcgcgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgcgttttttcaaccagaaaatcgcgcagaagc |
300 |
Q |
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||||||||||| |||||||| || ||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
10197084 |
aaatcacagtgcagaccttcgtcacgtgaaataagctcgtttgagaatgttaaccctggcattaaaccgcgctttttcaaccagaaaatcgcgcaaaagc |
10197183 |
T |
|
| Q |
301 |
ttccagagaagaaaat |
316 |
Q |
| |
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|||| ||||||||||| |
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| T |
10197184 |
ttccggagaagaaaat |
10197199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 19457715 - 19457406
Alignment:
| Q |
1 |
tttcacaaccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccgttcatcccaaccaacgcgcaaggaagcgcgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||| |
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| T |
19457715 |
tttcacaaccaagctcacccaataacctatcagcaacaaactcaatatacgtactcatcaaacccccattcatcccaaccaacgcgcaaggaagcgcgtg |
19457616 |
T |
|
| Q |
101 |
gcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttctttcgtagaagtgagtataacaaacaagca |
200 |
Q |
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||| ||||| || | ||||||||||||||||| || |||||||| ||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
19457615 |
gcacacaaactccctttcaatttcaacagcatcacaaacaatttctttcacgcgctctgaacttagcttctttcgtagaagtgagtataacaaacaagcg |
19457516 |
T |
|
| Q |
201 |
aaatcacagtgtagaccttcatcgcgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgcgttttttcaaccagaaaatcgcgcagaagc |
300 |
Q |
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||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
19457515 |
aaatcacagtgcaatccttcgtcgcgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgcgctttttcaaccagaaaatcgcacagaagc |
19457416 |
T |
|
| Q |
301 |
ttccagagaa |
310 |
Q |
| |
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|||| ||||| |
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| T |
19457415 |
ttccggagaa |
19457406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 3 - 316
Target Start/End: Original strand, 25025378 - 25025691
Alignment:
| Q |
3 |
tcacaaccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccgttcatcccaaccaacgcgcaaggaagcgcgttgc |
102 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
25025378 |
tcacaaccaagctcacccaataacctatcagcaacaaactcaatatactgactcatcaattcaccgttcatcccaaccaacgcgcaaggaagcgcgtcgc |
25025477 |
T |
|
| Q |
103 |
agacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttctttcgtagaagtgagtataacaaacaagcaaa |
202 |
Q |
| |
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| ||||| || | |||||| ||||| |||| | ||||| | | ||| ||||||| | | ||||||| || | || |||||||||||||||||||| |
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| T |
25025478 |
atacaaactccctttcaatctcaaccgcatcacgaacaatcttcaccacgcgctctgtactcagtttctgacgcaatagcgagtataacaaacaagcaaa |
25025577 |
T |
|
| Q |
203 |
atcacagtgtagaccttcatcgcgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgcgttttttcaaccagaaaatcgcgcagaagctt |
302 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25025578 |
atcacagtgtaagccttcgtcgcgtgaaataagctcgtttgagaaagttaatcccggcattaaaccgcgttttttcaaccagaaaatcgcacagaagctt |
25025677 |
T |
|
| Q |
303 |
ccagagaagaaaat |
316 |
Q |
| |
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|| ||||||||||| |
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| T |
25025678 |
ccggagaagaaaat |
25025691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 42307884 - 42307838
Alignment:
| Q |
3 |
tcacaaccaagctcacccaataatctatcagcaacaaactcaatata |
49 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42307884 |
tcacaaccaagctcacccaataacctatcagcaacaaactcaatata |
42307838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 682764 - 682675
Alignment:
| Q |
3 |
tcacaaccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccgttcatcccaaccaacgcgcaagga |
92 |
Q |
| |
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||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
682764 |
tcacaaccaagctcatccaataacctatcagcaacaaactcaatatactaactcatcaattcaccgttcatcccaaccaacgcgcaagga |
682675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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